Clone Read LE_HBa0166G10_SP6_78258

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166G10_SP6_78258
Primer
SP6
ID from Seq. Facility
LE_HBa_166_G10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
493 trimmed for vector and quality, 858 raw
Sequence
>LE_HBa0166G10_SP6_78258 (raw untrimmed)
GGTTTATATGTAGAATGTATTTGTAGACACTTTCTGCGAGTAGGCTTTAGTTTGTGTCCTCATGCAATTCATAGTAAGATGATAACATATGCCTCTATAA
AACTCAAGGTGCATGAGAAGAATTACCCAACTCATGATTTTATATTATTGGTCATAGTGTTTGCATCAATGGTTTGGACACACTATCTATATGGGCTGCA
TGTGGATGTCTTCCCAAACCACAAAGTCTCCAATATGTGCTCAGTAAAAAGTTGTTAAAACTCCGACAGAAAACATGGTTATATCTCTTTAAGGACTATG
ATATGAGTGTCCTTTAACATCTCGACAAAGACAATGTGGTGGTAGATGCTTTAAGTCGAATGTCAATAGATAGTTTCGCCCATTTTCCCAATGGTAAGGA
AGTGTTATGGAAACAGGTGCATAGATTGGACAAGTTGGGTATTCGGTTAGAAGATTCCCAAAAAGGAGATTTCATGGTTAATCATAAATTCTATTCATCT
TTTCTTGTTGAGATGAAGTCAAAGCAACATATTAATCCTCTATTTATGGTGTTTAAGGAATTAGTTCTAAGAAAATCTAATGAATTCCTTCCCCAAAGGG
GGGACGAGGAACTTATGCTACATAGGTATTTTTTAAGTTCTGGTGTTTTTATTGACTTTACTTTATATTTTTTACATATTTCGGCTCTTGTTTACCTCTT
TCCTTTACTACTTCCTACCTCCAACCAAAATATACAAAGTTCCTACTTCTTTTTCCCCTATTTATAAACTATTTAACTATAAATTCTTATTATCTTTTCT
ATATATAATTTTTTTTTTTTGTTTTTTTTACTATTATCCTCTTTCTTCTTATCTAATC
>LE_HBa0166G10_SP6_78258 (trimmed for quality and cloning vector)
GTTTGTGTCCTCATGCAATTCATAGTAAGATGATAACATATGCCTCTATAAAACTCAAGGTGCATGAGAAGAATTACCCAACTCATGATTTTATATTATT
GGTCATAGTGTTTGCATCAATGGTTTGGACACACTATCTATATGGGCTGCATGTGGATGTCTTCCCAAACCACAAAGTCTCCAATATGTGCTCAGTAAAA
AGTTGTTAAAACTCCGACAGAAAACATGGTTATATCTCTTTAAGGACTATGATATGAGTGTCCTTTAACATCTCGACAAAGACAATGTGGTGGTAGATGC
TTTAAGTCGAATGTCAATAGATAGTTTCGCCCATTTTCCCAATGGTAAGGAAGTGTTATGGAAACAGGTGCATAGATTGGACAAGTTGGGTATTCGGTTA
GAAGATTCCCAAAAAGGAGATTTCATGGTTAATCATAAATTCTATTCATCTTTTCTTGTTGAGATGAAGTCAAAGCAACATATTAATCCTCTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952922
Expected error %
0.201191
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38733.1| Score 108 E Value 7e-38 Identity 55.10% Align. Length 487bp (98.78%) Frame 1
putative retrotransposon gag protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 102 E Value 6e-39 Identity 49.50% Align. Length 472bp (95.74%) Frame 1
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166G10
Clone
Clone name
hba-166g10
LE_HBa0166G10
C06HBa0166G10
P166G10
Clone type
BAC
Contamination
none
Estimated length
85,993
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found