Clone Read LE_HBa0069G24_SP6_83662

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0069G24_SP6_83662
Primer
SP6
ID from Seq. Facility
LE_HBa_069_G24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
648 trimmed for vector and quality, 881 raw
Sequence
>LE_HBa0069G24_SP6_83662 (raw untrimmed)
AAAAAATAAGGGGGTGCCGGGACCAGTGAGAGTAATTATGACTTGGGGTGACTATTTTTGTCAGTGGCATAGGACCAGACTAATACACTTTTATCGCGTC
CTTTCAAGATGCCAAAGCCATATGGGAAATTTTACAAACCGCTCATGAAGGAACAACACAAGTCAAGAAGTCTAAAATTGATAACTTGAACAGGCAATAT
GAGCTGTTCAGGATGGCAGAAGGGGAGAATATTCAAGACATGCACACCAGGTTCACCTCCATCATCAATGATATGTACTCCTTGGGAGAGATAGTTCCTA
ATGGAAAGGCAGTAAGGAAACTCTTGAGTGTCCTTCCTGAAACTTGGGAAAGTAAAGTCGAGGCTATCACTGAAGCCCGCGACCTATACTCACTGGCCAT
GGATGAGTTGATTGGTAATCTCATCACATACGAACTCAAGAAAAACCAAGAAAAGGAAATTGGAGGAAAAAGGAAGGAAAGGAACCTGGTTCTAAAGGCT
ATCACATCAGATGATTTTGAAGATGAAAATATTGCCCTCATAACCAAAAGGTTCACCAGAATGCTAAAGAGAGGGCAGTCCTTTCAAAAGAAAACTTCTC
AAAAACCATCTGAAAACACTAAAGACCAGGTTTGTCATAAGTGTGGGAGCTCAGATCACTTCATCAAATTCTGTCCACTTTGGGCTTTAGAGCAAAAAAA
GGCAAACTTTGAGAAGGGCAATGACATCAAGAATGATAAGTACATTCCCACAAACAGAACAAATGACCAATCAAGAAGCGGATCTTTCAACAAGAAAAGC
CTTTGCCGCTATGGGGGAATTATCGGAAGAAAAATTGAGGATGGAGGGGTCCAAAAATCAGTCCCACTTGCAAAAAAACAT
>LE_HBa0069G24_SP6_83662 (trimmed for quality and cloning vector)
CGTCCTTTCAAGATGCCAAAGCCATATGGGAAATTTTACAAACCGCTCATGAAGGAACAACACAAGTCAAGAAGTCTAAAATTGATAACTTGAACAGGCA
ATATGAGCTGTTCAGGATGGCAGAAGGGGAGAATATTCAAGACATGCACACCAGGTTCACCTCCATCATCAATGATATGTACTCCTTGGGAGAGATAGTT
CCTAATGGAAAGGCAGTAAGGAAACTCTTGAGTGTCCTTCCTGAAACTTGGGAAAGTAAAGTCGAGGCTATCACTGAAGCCCGCGACCTATACTCACTGG
CCATGGATGAGTTGATTGGTAATCTCATCACATACGAACTCAAGAAAAACCAAGAAAAGGAAATTGGAGGAAAAAGGAAGGAAAGGAACCTGGTTCTAAA
GGCTATCACATCAGATGATTTTGAAGATGAAAATATTGCCCTCATAACCAAAAGGTTCACCAGAATGCTAAAGAGAGGGCAGTCCTTTCAAAAGAAAACT
TCTCAAAAACCATCTGAAAACACTAAAGACCAGGTTTGTCATAAGTGTGGGAGCTCAGATCACTTCATCAAATTCTGTCCACTTTGGGCTTTAGAGCAAA
AAAAGGCAAACTTTGAGAAGGGCAATGACATCAAGAATGATAAGTACA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.945847
Expected error %
0.447515
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC18777.1| Score 120 E Value 3e-26 Identity 13.00% Align. Length 590bp (91.05%) Frame 1
gag-protease polyprotein [Glycine max] pir||T06419 gag-proteinase polyprotein - soybean retrovirus-like element
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC64917.1| Score 118 E Value 1e-25 Identity 12.70% Align. Length 590bp (91.05%) Frame 1
gag-pol polyprotein [Glycine max]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0069G24
Clone
Clone name
hba-69g24
LE_HBa0069G24
P069G24
Clone type
BAC
Contamination
none
Estimated length
95,528
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found