Clone Read LE_HBa0072O04_SP6_84774

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0072O04_SP6_84774
Primer
SP6
ID from Seq. Facility
LE_HBa_072_O04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
705 trimmed for vector and quality, 905 raw
Sequence
>LE_HBa0072O04_SP6_84774 (raw untrimmed)
CCCGCCCAAGCATAGAGCATAGTTATTTTCTCCCATCAACTAAAAATATTTCTGTTGCTCATCTTGACATAAAATAATTCTATTAAAGCCCCATCAGAAA
TAACACATTCACGATTCTTCCCTTGCAGTGAACAATTATTTTCAAGCATTTACCCAACTCACAACAAATTCCGATTCATATCAGGTGTGTACAAAACATC
AAAAATAGTTAAATATTTGATATTGTTGAGATAGACAGTGTACCTCTACTATTGACTTCTACCGCCTCACCGTTTACTACTTTTACTTTAGATTTGTAAG
TACGATCAAGGAATTTGAACATTTCAACAAAATTGCACAAGTGTTGTATGTAACCACTATGAAGAAGCCATGAATCATAGGATTTTGAAAGAGACTACAA
AGAGTTGCTCCGTATGTGGATCTTAAGAATCTGCTACTTGTGCTTGCAAAGCATTAGAGGCCATTGCTCTTGATTTGTAGACCTTGGATGACACATATAA
CATCAACTCTCCACCAACAGTACTTCTCCAGATGTGTATTTCCCTTGCAATGTTTGCACGGAGGGAAGTTCTGCTTCACATCTCCACTATTGTTTCGTTC
ATCATGCTTGCCCTTGATCTTTTGATTGAACTATTGCTTTCCTTTTTGCTTTTGTACAGAGAAACCTCATTCAGTGAACTTGTCCCATCTCATAGTCCTT
TTTTGTTCTTGTACTTGAAAAGCACGCATTAGTTCACCTAATGAAAGTTTGCCAGGTCCTTGGATTCTTCAAGGAAGAAATCTTAGATTCCAACCTCTCA
TGAAAATTCACAAAACTTTCTCCACATTTGTTTGTTTGTAAATCCTCAGCAAGAAGTCAATGTTATTAACAATAATGAGATTTGATTACCTTCTTACCGA
TTGTT
>LE_HBa0072O04_SP6_84774 (trimmed for quality and cloning vector)
TTTTCTCCCATCAACTAAAAATATTTCTGTTGCTCATCTTGACATAAAATAATTCTATTAAAGCCCCATCAGAAATAACACATTCACGATTCTTCCCTTG
CAGTGAACAATTATTTTCAAGCATTTACCCAACTCACAACAAATTCCGATTCATATCAGGTGTGTACAAAACATCAAAAATAGTTAAATATTTGATATTG
TTGAGATAGACAGTGTACCTCTACTATTGACTTCTACCGCCTCACCGTTTACTACTTTTACTTTAGATTTGTAAGTACGATCAAGGAATTTGAACATTTC
AACAAAATTGCACAAGTGTTGTATGTAACCACTATGAAGAAGCCATGAATCATAGGATTTTGAAAGAGACTACAAAGAGTTGCTCCGTATGTGGATCTTA
AGAATCTGCTACTTGTGCTTGCAAAGCATTAGAGGCCATTGCTCTTGATTTGTAGACCTTGGATGACACATATAACATCAACTCTCCACCAACAGTACTT
CTCCAGATGTGTATTTCCCTTGCAATGTTTGCACGGAGGGAAGTTCTGCTTCACATCTCCACTATTGTTTCGTTCATCATGCTTGCCCTTGATCTTTTGA
TTGAACTATTGCTTTCCTTTTTGCTTTTGTACAGAGAAACCTCATTCAGTGAACTTGTCCCATCTCATAGTCCTTTTTTGTTCTTGTACTTGAAAAGCAC
GCATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954187
Expected error %
0.596335
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38797.1| Score 96 E Value 2e-40 Identity 45.50% Align. Length 702bp (99.57%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF20282.1| Score 50 E Value 4e-13 Identity 39.60% Align. Length 328bp (46.52%) Frame 3
gag-pol polyprotein [Vitis vinifera]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0072O04
Clone
Clone name
hba-72o4
LE_HBa0072O04
C02HBa0072O04
P072O04
Clone type
BAC
Contamination
none
Estimated length
93,409
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found