Clone Read LE_HBa0143C19_T7_88837

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0143C19_T7_88837
Primer
T7
ID from Seq. Facility
LE_HBa_143_C19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
526 trimmed for vector and quality, 775 raw
Genbank Accession
DU077687
Sequence
>LE_HBa0143C19_T7_88837 (raw untrimmed)
CTCGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCTTCACTGTACCAACCTTGCCAACTTTTCAGAGGAATGTTAAAGTATTTG
AATACTTCAGTAAGAAAGTATCCATATCCCATTTCATGTATTCCTTTCCTCTCAATAACAGTCTTGTACATGTGTTCAAGCATGAGCCCTGTAAGATTCA
GAGGTTCAAATTTGCACAACAACTCCATCACAAACAAATCAGCAGAAGTAGCTGAGGTACTCTTTTCAGGTCGAGGAAGTAGAGATTTGTTTACAAACTC
AAACACCAACTGATACTCACTTTTCATCACCTTCTTAAAAAACCCTGCACACTTTGTTGTGGGAAGCTTCGAGACAAATGCCACAAACTAAGCCGAACAA
GTCTTCCAAATCACAGACCTGGTACCCTCTCGAGGTACCTTAAGAATTTTTCCTAATAGAAACTCATCCAGATGCACTGCAATATCATTCACTCTGGTAA
GGACACTCCCATTTTCCTTAAATTGAATGTTGTAATAAAATTCACACACATTCTCTTCATGAAAGAATAGGAGATTTTCTGTTAAAGAGATGCATCTCTG
ACTGAAACAGAACCAAGATCAGGGAGAGAAATCTTGTGTGAAAGTTAATTAATTACAAGCTAAGTAATCTGCTTTGTGCGTATTATCGGTTATTAAATGG
TTTAGATATGTAAAAGATTGATGTTTGACATAAATAAATATGATGATGAAAATAGTGCTGATGCCGACTATGTCA
>LE_HBa0143C19_T7_88837 (trimmed for quality and cloning vector)
AGCTTCCTTCACTGTACCAACCTTGCCAACTTTTCAGAGGAATGTTAAAGTATTTGAATACTTCAGTAAGAAAGTATCCATATCCCATTTCATGTATTCC
TTTCCTCTCAATAACAGTCTTGTACATGTGTTCAAGCATGAGCCCTGTAAGATTCAGAGGTTCAAATTTGCACAACAACTCCATCACAAACAAATCAGCA
GAAGTAGCTGAGGTACTCTTTTCAGGTCGAGGAAGTAGAGATTTGTTTACAAACTCAAACACCAACTGATACTCACTTTTCATCACCTTCTTAAAAAACC
CTGCACACTTTGTTGTGGGAAGCTTCGAGACAAATGCCACAAACTAAGCCGAACAAGTCTTCCAAATCACAGACCTGGTACCCTCTCGAGGTACCTTAAG
AATTTTTCCTAATAGAAACTCATCCAGATGCACTGCAATATCATTCACTCTGGTAAGGACACTCCCATTTTCCTTAAATTGAATGTTGTAATAAAATTCA
CACACATTCTCTTCATGAAAGAATAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.943191
Expected error %
0.689903
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38783.1| Score 117 E Value 1e-25 Identity 16.40% Align. Length 419bp (79.66%) Frame 3
hypothetical protein PGEC872C13.4 [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0143C19
Clone
Clone name
hba-143c19
LE_HBa0143C19
C03HBa0143C19
P143C19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found