Clone Read LE_HBa0043D23_T7_93501

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0043D23_T7_93501
Primer
T7
ID from Seq. Facility
LE_HBa_043_D23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2393 raw
Sequence
>LE_HBa0043D23_T7_93501 (raw untrimmed)
AGGTAGGANAGAGAGTAGCCAGATAGCTATGCNCGAGGACACNAGTCACAGCGACAANANGCGAGAGGGCAATGCGCAGATNGACGCAGCAGNTATAGAG
TGAGAGACCGTCATCATANCGTAGCAGATGTGCAGCGNACAACTTGATAGTGTNGTAGTGAGAGNATNAGACANCNAGTTAGTATCGANGTTNACACAAT
GTANCGAAGCTCTGCGCTCTTTTATTGTCACAGTGAGNCNACACTACATTACTNNANTAGTGATNGNGACTATGTGCTTGCTNCTGAGTGATGAGAGACN
TGTGTANCCAGTTGANCATCCCACACTGATGTNTATATNACGAGTGGCGACTGCNGATATNTCGCNAGCCTGCCAAATNGCTGCGNTNCGTTCGCNTGTG
GCGANCGCTGTATGAGCTATGCGCACGCTCCATGATNAGCTATCACAGACTGANTCACGCACTCGACATGCATGNANGTATGCAAANAGCAATGAANACA
ACGACNCNTAGNGACTGAGAGCGGNNCAGCGCNACANTATGCAAGCGGNGCAGTCACACGCACGCCACGCACGGATATCGCGCGCTGACATGANCATATG
CCATCTAGTTNTNANTNTGCTACTGTCGTNCACACTTGATTATCNCATTTNATATGTNCNTNACAGCGCATGAGTCAACACCNGACGANCGCAACANGAT
NGACGANANCGATGANTGATGCATGCGAACAATNCGCANAGNATANTACTATGCGCTNCGTNCGTCATCTGACCTTCCACTTNCGTCTNCTATNCNCTTN
GNNCGNCGCCTGCGTGCAGTCATGAATGCACGACGNTGTCATGCGTCCTCATCTNATGCGCATACAGCGCCANANCNANGACAGNCATGTNAGCGNACTN
ANTCGCGTANCTGTACGATNCNCNCTCACACAGGNTGCTGANGATACAGGTCTGCAGATACACGACTGTCATAGANTNGAANGCATACGNGCGAATAGCT
GATCTGATAACTTNCACGATNNGNGACGNANGTGAAGTGNTATGANTNATCGAATANGTGTACGCGCAACCAGATGACGGCGGATAATGAGNGAANANTN
GACTGCGCGTGTGTCAATGTACGAGACGTTGNGTGCATGACAGTGTACATGACTTNCGCGCTACNAGAGAGATATNGNGCACGCGAAGCAGNTAGTGCTG
CTCAAANGANCAGCTATAGNACNCTCACATGCAGCGTGACACGNANTGACANNGATATAGTGCGACTAANCTTTNCTGCGANGCANCGATNCGNNTGACA
GTNACATATATACTGCAATGCAGTCCTGGCAGTGATNCNCTGANAGANCACATNGCGACTATAGTGGGACTTGGACTNACCTCGACNGNCGACNCGNCAT
NATNACTNCCTGTGGGCNGCCNAGCGGGNTGATCGAGCGNTGTGCGATNGATNATATANCGNNGNCTGGNTCGACAGNCACGGTGGACNGNGCCGACATC
TCCAGATCGTNNATCGNCAGCGTGCAACGTTAGCGAAACAACATNCGCGCAGACGTACGCGATTTGCTNCTACAGCANGTNAGACTGAGNGNGACANNAN
CNTGTGNGTGACATAGTGCAGACAAGCAGCGTGCAGTNGNNACGNCTGAACNGCAGCTCACTGCAGCGAGNGCTATGCGTGCGTGCNANAGTGAGCATGA
CNGTCGGCGATGCGGCTNCACAGCGGCATATATNGNTNAGGCTACNGTGAGACTAGANGANGCAGNTNGCGTAAGTGCTNATNTNTAGCGCANTCGAAAT
CGAACTANANGCGATNCTGTNCTTNNGACTGCGATTANACNGTTACTGANCTNCATCNCTACANCNGATGNCNATTAGTCGCTGTCNATGTGACGTNATN
ACGTACTGCGACNANTGCTGCTGNCTATNGAGTANCNGCAGCAGTGTACAGTGTANGCNGCATNATNNCGCGTNNANTGNTGGNGGGCACATNGNGCTCG
ACGGNCGNCGTGCTGGTANCATNANAGCATACTCATNCTNTNCGCCTAGTNGCGCTNCTACCGGATTAGTGNNCTGCAGCGTACCTGGNATGTACNCGTN
GTNNCTGCATNATGCNGCAACGATGATATNGNCTNGTNCNTGACNCTANCTGTGCTAAGTNCGCCGACAGCTGCTCACTNACNGTACAGNCTNCGCTNCA
ACNANCAGNANCTGTCGCATGAANCGNCGGCNCGNCGATNGCATGCNCNACNTNCTGTNCGANGCAGTGNGAGACANANAGGAGNANTACAGTNGNCGCA
CGANCGTGAACNCGATATGCGCATGAGTAGCGGCNGACGCATNGTNCGACATGACAGCGACNGACNACCCAGTACAGAATNGACTCGANGCAN
>LE_HBa0043D23_T7_93501 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.31548
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0043D23
Clone
Clone name
hba-43d23
LE_HBa0043D23
C01HBa0043D23
P043D23
Clone type
BAC
Contamination
none
Estimated length
131,448
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found