Clone Read LE_HBa0109B01_T7_96433

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0109B01_T7_96433
Primer
T7
ID from Seq. Facility
LE_HBa_109_B01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
566 trimmed for vector and quality, 935 raw
Genbank Accession
DU058066
Sequence
>LE_HBa0109B01_T7_96433 (raw untrimmed)
GCTGTGACTTGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATCACGCTCAACTTCCTGAGCATTTGTCATCATCCTGGAGATGTCC
ATATCTCCCAGTAACATAGAATTTTTGCACTCACTTCCCTAAATCTGACACTCCATACAAGTACTTATTAATCTAAGCCCTGGAGTCAGCAACCATGTGA
CAAGCATACTTGGAAATTTGGTTAAACTTGATCCATTACTCTAGGACCGTTATGTTTCCCTACCATTAGTTTATGAATTCCCGAGGCTTTGGTTCTCTCA
ACTCTATTGGGACCAGAAAGTTCTCACTAAAGCAATCCCAAGTAATAGGAGTTGCATTTGTATACCTACTTTCCTTCCACTGTGTACTAGATATCAGCAA
CATCTTTCAAATGGTATGATGCCAACTCAACCCGATCATTTCTAGCGACCTACATCACCTCAAAGATTTTTTTGATCTCCCCCCAGAAGCTATGAGGATC
CTCACTAAAAAGAAATCCTAAGAACTCAGGTGGATTCACCCCAAGAAAGTANACTCTCCTTTTAATTGTGGATTCACCATTTTTCATTCTCATGAACTTG
AATCTCCTGATTTGTTTAAGAGGACNTTTATTTGAATCCATCCTTTGATTGAAATTTTTGAATTTATTATTAGATACTTCCTGATATTGGATTGGAGGAT
TTGTGTTTTTTTTTTTTGTCTTTATTTCTACCAGGAAAAATGATTTGAAAAGTAAAACGTCAATGTTGATGAAAAATAAGAAATAAATCTTTTAATAAGT
AATTATATTAATTATTGTATCTTTTTCTTAAACATTGTTTTTTTTTCTTTTATATACATGTTTTTTTTCTCCCCCTTGAATTTCTTCTTTAATTGTTTTT
TTTACGGGTTCTAGGTGACCTGTCACTCAACTCGT
>LE_HBa0109B01_T7_96433 (trimmed for quality and cloning vector)
AGCTTATCACGCTCAACTTCCTGAGCATTTGTCATCATCCTGGAGATGTCCATATCTCCCAGTAACATAGAATTTTTGCACTCACTTCCCTAAATCTGAC
ACTCCATACAAGTACTTATTAATCTAAGCCCTGGAGTCAGCAACCATGTGACAAGCATACTTGGAAATTTGGTTAAACTTGATCCATTACTCTAGGACCG
TTATGTTTCCCTACCATTAGTTTATGAATTCCCGAGGCTTTGGTTCTCTCAACTCTATTGGGACCAGAAAGTTCTCACTAAAGCAATCCCAAGTAATAGG
AGTTGCATTTGTATACCTACTTTCCTTCCACTGTGTACTAGATATCAGCAACATCTTTCAAATGGTATGATGCCAACTCAACCCGATCATTTCTAGCGAC
CTACATCACCTCAAAGATTTTTTTGATCTCCCCCCAGAAGCTATGAGGATCCTCACTAAAAAGAAATCCTAAGAACTCAGGTGGATTCACCCCAAGAAAG
TANACTCTCCTTTTAATTGTGGATTCACCATTTTTCATTCTCATGAACTTGAATCTCCTGATTTGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963091
Expected error %
2.38174
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 65 E Value 4e-26 Identity 46.90% Align. Length 496bp (87.63%) Frame 1
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 65 E Value 7e-25 Identity 43.20% Align. Length 496bp (87.63%) Frame 1
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0109B01
Clone
Clone name
hba-109b1
LE_HBa0109B01
P109B01
Clone type
BAC
Contamination
none
Estimated length
111,032
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found