Clone Read LE_HBa0109N05_SP6_97016

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0109N05_SP6_97016
Primer
SP6
ID from Seq. Facility
LE_HBa_109_N05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
45 trimmed for vector and quality, 831 raw
Sequence
>LE_HBa0109N05_SP6_97016 (raw untrimmed)
GGGGGGGGAGGGGGGGGGGGGGGGCAGTCCTAAGCAAACCAATCTATCATTTCTTATACTGAAAAAAACCCTAAATCAGTTCGACAAAAATTCCCTCGAG
GAACCGAGAAAACCAAACCGNAGAANCGAACAACCCTCCGAGGAAGCGGAGGCGGAGACGAGCGGCACANNACGAACGGCGCACCGGAAGGGCGGCNCGN
GCAAGGCGGTTAGCAGAGCACCACCAAACCCAAAAAACACGACGGGAAGGGCGGACGCAGNAAGCAACACCCCCCAGAGGAAGGGGAACCCCGCACGAGG
ACACGACACGCGCGAAAAGCCACAGGACAACCGACACCGCCACGGCGCGAACAGAACAAGCNCNAAAGGCCGGGAAGGCAGCAGGAAACACAACGAGCGG
CGGCCGCGGAAAGGACCCAGCNACGNGCCGACACCCAGAAGAAAGCCCCCGCAAGAGACAAAGCGAGGAGCAAACGGAAAACAGAAGCGAAACGAACCCG
CCGGAGAGGCAGGCAAGCAAAGAGAAGAGAAGACGGACACCGAGACGACCGACAACACCCACAACCGCAGCCACAAGCAGACGGGCCAAACCAGCCCCAG
CCAACAAAGCAGAAACAACCGACACCAAGCCACACGGGCCNCGGAAAAGCAGGACGAAAAGCACCACACACCACCAACACACCCAACGAACACGCCGACC
GCCCAACCGACGCGACACGACACGAGCCAAGCACCCCCGCAACGCGAACCCGACCCCCCCCCCCCCCCCCGCAAGAAGCCCCAACCAACCCCGGCCCACA
CCCGAAGCGACCAACCCCCACCCCACCGACC
>LE_HBa0109N05_SP6_97016 (trimmed for quality and cloning vector)
TATCATTTCTTATACTGAAAAAAACCCTAAATCAGTTCGACAAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.783955
Expected error %
0.765199
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0109N05
Clone
Clone name
hba-109n5
LE_HBa0109N05
C12HBa0109N05
P109N05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found