Details for species Solanum habrochaites
| Basic information |
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Scientific Name
Solanum habrochaites
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Common name
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Description
Solanum habrochaites is a wild tomato species that is found on the Western slopes of the Andes from Central Ecuador to Central Peru. It has been used in a numerous genomic studies, such as identification of QTLs for traits of agronomic importance (1) or analysis of a set of 99 near isogenic lines (NILs) and backcross recombinant inbred lines (BCRILs) that cover more than 85% of Solanum habrochaites genome (2). It has also been used in biochemical analysis of fruit sucrose accumulation (3).
More tomato genetic resources can be found in: * Tomato Genetic Resource Center. |
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Synonyms
non Solanum hirsutum (Vahl) Dunal, Solanum habrochaites S.Knapp & D.M.Spooner, Lycopersicon hirsutum Dunal, Lycopersicon hirsutum
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| Taxonomic information |
asterids, lamiids, Solanales, Solanaceae, Solanoideae, Solaneae, Solanum, Lycopersicon
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| Image | Description | Type |
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| External Links |
| Metabolic details |
See LycoCyc
 Genome data
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Genome data|
Ploidy
2n
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Genome size
N/A
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Chromosome number
12
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| Available loci |
| Available maps |
| Transcript Information
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| Libraries (2) |
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Attribution
The Solanum habrochaites data has been submitted by the Tomato Genome Project funded by the NSF. Most libraries were generated in the laboratory of Prof. Steven Tanksley at Cornell University. The sequencing was mostly performed by TIGR.
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| Phenomic Details
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| SOL-100 Genome sequencing project data
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| Sequencing Center | BGI & WUR | |
| Genbank link | http://www.ipk-gatersleben.de/Internet/Forschung/Genbank | |
| Project URL | http://www.tomatogenome.net | |
| Project start, end | 01/2012 - 06/2013 | |
| Accession | LYC4 | |
| Funding Agencies | TTI-GG, EDV, industry & academics | |
| Contact (name, email) | Richard Finkers, Richard.finkers@wur.nl | |
| Seed source |
| Genbank link | http://tgrc.ucdavis.edu/Data/Acc/AccDetail.aspx?AccessionNum=LA1777 | |
| Project start, end | 01/2012 - 06/2013 | |
| Project URL | http://www.tomatogenome.net | |
| Accession | LA1777 | |
| Funding Agencies | TTI-GG, EDV, industry & academics | |
| Contact (name, email) | Richard Finkers, richard.finkers@wur.nl | |
| Seed source | ||
| Sequencing Center | BGI & WUR |
| Sequencing Center | BGI & WUR | |
| Funding Agencies | TTI-GG, EDV, industry & academics | |
| Contact (name, email) | Richard Finkers, richard.finkers@wur.nl | |
| Seed source | ||
| Genbank link | http://www.cgn.wur.nl/UK/ | |
| Project URL | http://www.tomatogenome.net | |
| Project start, end | 01/2012 - 06/2013 | |
| Accession | CGN1.1561 |
| Sequencing Center | BGI & WUR | |
| Funding Agencies | TTI-GG, EDV, industry & academics | |
| Contact (name, email) | Richard Finkers, richard.finkers@wur.nl | |
| Seed source | ||
| Genbank link | http://www.cgn.wur.nl/UK/ | |
| Project URL | http://www.tomatogenome.net | |
| Project start, end | 01/2012 - 06/2013 | |
| Accession | CGN15792 |
| Seed source | ||
| Contact (name, email) | Richard Finkers, richard.finkers@wur.nl | |
| Funding Agencies | TTI-GG, EDV, industry & academics | |
| Accession | PI134418 | |
| Project URL | http://www.tomatogenome.net | |
| Project start, end | 01/2012 - 06/2013 | |
| Genbank link | http://www.ars.usda.gov/ | |
| Sequencing Center | BGI & WUR |
| Sequencing Center | BGI & WUR | |
| Project URL | http://www.tomatogenome.net | |
| Project start, end | 01/2012 - 06/2013 | |
| Accession | LA0407 | |
| Genbank link | http://tgrc.ucdavis.edu/Data/Acc/AccDetail.aspx?AccessionNum=LA0407 | |
| Contact (name, email) | Richard Finkers, richard.finkers@wur.nl | |
| Seed source | ||
| Funding Agencies | TTI-GG, EDV, industry & academics |
| Genbank link | http://tgrc.ucdavis.edu/Data/Acc/AccDetail.aspx?AccessionNum=LA1718 | |
| Project start, end | 01/2012 - 06/2013 | |
| Project URL | http://www.tomatogenome.net | |
| Accession | LA1718 | |
| Funding Agencies | TTI-GG, EDV, industry & academics | |
| Contact (name, email) | Richard Finkers, richard.finkers@wur.nl | |
| Seed source | ||
| Sequencing Center | BGI & WUR |
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