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Tomato locus dwarf
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases Links to external databases |
Registry name: | None | [Associate registry name] |
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Image | Description | Type |
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Accessions and images (100) Accessions and images (100) | [Associate accession] |
Accession name:
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LA0313 | ||||||
LA0570 | ||||||
LA0160 |
See 97 more accessions
LA0085 | |||||
LA0330 | |||||
LA1700 | |||||
LA3615 | |||||
LA0986 | |||||
LA0013 | |||||
LA0571 | |||||
LA1525 | |||||
LA1444 | |||||
LA0014 | |||||
LA0154 | |||||
LA2466 | |||||
LA0638 |
LA0646 LA0639 LA0650 3-420 3-422 3-623 3-624 LA0157 LA0181 LA0182 LA0186 LA0199 LA0204 LA0205 LA0213 LA0257 LA0274 LA0282 LA0284 LA0286 LA0287 LA0290 LA0306 LA0310 LA0311 LA0320 LA0321 LA0342 LA0507 LA0508 LA0514 LA0642 LA0714 LA0715 LA0727 LA0731 LA0732 LA0733 LA0741 LA0754 LA0771 LA0775 LA0777 LA0783 LA0789 LA0790 LA0793 LA0900 LA0901 LA1052 LA1163 LA1168 LA1219 LA1526 LA1534 LA1796 LA1797 LA2071 LA2349 LA2366 LA2371 LA2441 LA2474 LA2476 LA2479 LA2480 LA2485 LA2510 LA2513 LA2514 LA2595 LA2596 LA2608 LA2609 LA2612 LA3022 LA3031 LA3208 LA3211 LA3212 LA3294 LA3449 LA3865 LA3902
Alleles (11) Alleles (11) | [Add new Allele] |
Allele symbol | Allele name | Synonyms | Phenotype | Accessions | |
---|---|---|---|---|---|
x | extreme | [add new] | 4 | [Edit] | |
im | [add new] | 1 | [Edit] | ||
b | broccoli | [add new] | 1 | [Edit] | |
1 | rob^imm | 0 | [Edit] | ||
provx-2 | extreme-2 | d^x | 0 | [Edit] | |
provcr-3 | crispata | d^cr | 1 | [Edit] | |
provcr-2 | crispata | d^cr | 1 | [Edit] | |
prov2 | d | 1 | [Edit] | ||
cr | crispata | rob^crisp | 1 | [Edit] | |
dac1 | ac-induced 1 | [add new] | 0 | [Edit] | |
dac2 | ac-induced 2 | [add new] | 0 | [Edit] |
Associated loci (0) Associated loci (0) | [Associate new locus] |
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Associated loci - graphical view | None |
SolCyc links SolCyc links |
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Sequence annotations Sequence annotations |
Genome features Genome features |
Genomic sequence Genomic sequence | unprocessed genomic sequence region underlying this gene |
>Solyc02g089160.2 SL2.50ch02:51044153..51046975
TGACTCTCTCTTGTGAAGTATAAAGGCAAGTAAAGAAGTCCATACCATTTAGACTACTACTCTGTCTGTGAGGTGGTTTGGTAACTTCTTTTGAAATTTTGAGGTGCATCAATGGCCTTCTTCTTAATTTTTCTTTCATCCTTTTTTGGCCTATGTATCTTTTGTACTGCTTTATTAAGATGGAATCAAGTCAAGTATAACCAAAAAAACTTGCCCCCTGGTACTATGGGTTGGCCACTTTTTGGTGAAACTACTGAGTTTCTTAAACTTGGTCCAAGTTTCATGAAAAACCAAAGAGCCAGGTAAATCTCGATTGTTCAATCATTTATATGATAAGCCACTGTGTGTTAACATAAATTCTGATTATAATTTTGTTGTACTATCAGATATGGGAGTTTTTTTAAATCACACATACTTGGTTGTCCAACAATTGTTTCAATGGATTCAGAACTGAACAGATATATACTAGTGAATGAAGCGAAAGGACTGGTCCCAGGATACCCACAGTCTATGATAGATATTTTAGGAAAATGTAATATTGCAGCTGTCAATGGTTCAGCTCACAAGTACATGAGGGGTGCATTGTTATCCCTAATTAGCCCTACAATGATCAGAGACCAACTTTTGCCTAAAATTGATGAGTTTATGAGATCCCACTTAACCAATTGGGATAATAAAGTTATTGACATTCAAGAGAAAACCAATAAGGTCAGTTACTAACCCAAGTCTTTTTGCCAAATTTATTTTCTTTCCTCTGTTTTTTTCCTCTGTTCTTATATATACGAGTTTTCAATCAGATGGCATTTCTATCATCGTTGAAGCAAATTGCTGGTATTGAATCTACCTCTTTAGCTCAAGAATTCATGTCTGAATTTTTCAATCTAGTGCTAGGCACTCTTTCACTACCTATCAATCTTCCAAACACCAACTATCATCGCGGATTTCAGGTAGAATTTCAGAATACTGTTATTTATGATGTTATCTGAGAGCATCTAATAATCTAGGAAAAATATTTTTCAGGCAAGGAAAATTATTGTGAACTTATTACGAACACTCATAGAAGAGAGAAGAGCTTCAAAGGAAATTCAACATGATATGCTTGGTTACCTGATGAATGAGGAAGCAACACGATTCAAATTAACAGATGATGAGATGATTGATTTAATTATAACTATTTTGTACTCTGGATATGAAACTGTTTCCACCACTTCTATGATGGCTGTGAAATATCTTCATGATCATCCAAAAGTTCTTGAAGAACTTAGAGTAAGTTCAAAAAAATTAAAAATCAGTTAATTAACTACATGGCTATTTTAATTTTTTCTTAATTTTATAACTTTATTTTTTGTTATTCTGCAGAAAGAACACATGGCTATTAGAGAAAAGAAAAAACCTGAGGATCCTATCGATTACAACGATTACAGGTCAATGCGGTTCACACGAGCTGTAAGCGTCTAATATAACACGTTAAATTACATCGATAGTGTATAACATGAAATAAATCAGCATATTGAATCTATATATATATATATATTTTGATTGTGCAGGTGATTTTAGAGACCTCCAGGTTAGCAACAATAGTAAATGGGGTTTTGAGAAAAACAACTCAAGATATGGAAATAAATGGTAAGTACTATTTTGTGGGAAAATCTCATGCATGTTAAATTATAGTTTTTTATCCATTGATCGTTTTTCGCAAGTTATTCAAAGAATATCTACGCACTAACTTCGTTTATGTGATCTTTAAAAGTAAAGATAAGCCGATGATTTAACATTCCAATTATTATTATATATAAAACTTAAAATTAATGTTTATTTGTTATGGTATTTGAGTGATTTTGGTGAAATTATGAGCATCAGATGCAGGGACAATATTCTTCTAATTTAGACTGATTAAAATGTTTAAAATAATAATAGATGTATATAGTATATGATCATCTTTTGTGTTATGGACCCTCTAATACCACAATCCACATGGCACACCTACCATTCCAGCCTATACAGTTTCCCTTCCTGACCCATGTGTCGTCTCTTAAACTTTTTGGGAAAGTACAATTTCCCTAATATTATTTTTTCCCATCATATAATAATTTCATTAATTCACAACTTTTATGTATACTTGGTCTTATTATTACTTTTTTATGTGTATCTTTTTAGGGTATATCATTCCTAAAGGATGGAGAATATACGTATATACAAGGGAGTTGAATTACGATCCAAGACTTTATCCTGATCCATATTCGTTCAATCCATGGAGATGGATGGTTAGTATCGTTGAAAATCGCGCGTATCCTATATTATCTATGCTGAATTTGATTTTTAAATCGGAGTTAACAAATAATTATGGTTCTTATTATAGGATAAGAGCCTGGAACACCAAAACTCATTTTTGGTATTTGGAGGTGGTACTAGACAATGTCCTGGAAAGGAACTTGGTGTAGCAGAAATTTCCACATTTCTTCATTACTTCGTAACAAAATACAGGTATTTAATATATAAACATATATAATAAAAAAATTATTAATTTTATCTCGTATTTGATGATCTGTTACTAAATTGAAGTTGTATTATGGTTTATGCAGATGGGAAGAAATAGGTGGAGATAAACTGATGAAATTCCCAAGAGTTGAAGCACCAAATGGTCTACGGATTAGAGTTTCAGCTCACTAACTATCAATTCATGAATGTACAGAGAAAAAAAAATTCAAAAAAAAAAGAGAAGAGATTTGTAGGATGCAAAGCTAAGAGTAACATGGGATGTACAACTTAATTATTATTCCCGCTAACATAATCACGAATTAAACACAATTTTTTGCAGAGTTA
TGACTCTCTCTTGTGAAGTATAAAGGCAAGTAAAGAAGTCCATACCATTTAGACTACTACTCTGTCTGTGAGGTGGTTTGGTAACTTCTTTTGAAATTTTGAGGTGCATCAATGGCCTTCTTCTTAATTTTTCTTTCATCCTTTTTTGGCCTATGTATCTTTTGTACTGCTTTATTAAGATGGAATCAAGTCAAGTATAACCAAAAAAACTTGCCCCCTGGTACTATGGGTTGGCCACTTTTTGGTGAAACTACTGAGTTTCTTAAACTTGGTCCAAGTTTCATGAAAAACCAAAGAGCCAGGTAAATCTCGATTGTTCAATCATTTATATGATAAGCCACTGTGTGTTAACATAAATTCTGATTATAATTTTGTTGTACTATCAGATATGGGAGTTTTTTTAAATCACACATACTTGGTTGTCCAACAATTGTTTCAATGGATTCAGAACTGAACAGATATATACTAGTGAATGAAGCGAAAGGACTGGTCCCAGGATACCCACAGTCTATGATAGATATTTTAGGAAAATGTAATATTGCAGCTGTCAATGGTTCAGCTCACAAGTACATGAGGGGTGCATTGTTATCCCTAATTAGCCCTACAATGATCAGAGACCAACTTTTGCCTAAAATTGATGAGTTTATGAGATCCCACTTAACCAATTGGGATAATAAAGTTATTGACATTCAAGAGAAAACCAATAAGGTCAGTTACTAACCCAAGTCTTTTTGCCAAATTTATTTTCTTTCCTCTGTTTTTTTCCTCTGTTCTTATATATACGAGTTTTCAATCAGATGGCATTTCTATCATCGTTGAAGCAAATTGCTGGTATTGAATCTACCTCTTTAGCTCAAGAATTCATGTCTGAATTTTTCAATCTAGTGCTAGGCACTCTTTCACTACCTATCAATCTTCCAAACACCAACTATCATCGCGGATTTCAGGTAGAATTTCAGAATACTGTTATTTATGATGTTATCTGAGAGCATCTAATAATCTAGGAAAAATATTTTTCAGGCAAGGAAAATTATTGTGAACTTATTACGAACACTCATAGAAGAGAGAAGAGCTTCAAAGGAAATTCAACATGATATGCTTGGTTACCTGATGAATGAGGAAGCAACACGATTCAAATTAACAGATGATGAGATGATTGATTTAATTATAACTATTTTGTACTCTGGATATGAAACTGTTTCCACCACTTCTATGATGGCTGTGAAATATCTTCATGATCATCCAAAAGTTCTTGAAGAACTTAGAGTAAGTTCAAAAAAATTAAAAATCAGTTAATTAACTACATGGCTATTTTAATTTTTTCTTAATTTTATAACTTTATTTTTTGTTATTCTGCAGAAAGAACACATGGCTATTAGAGAAAAGAAAAAACCTGAGGATCCTATCGATTACAACGATTACAGGTCAATGCGGTTCACACGAGCTGTAAGCGTCTAATATAACACGTTAAATTACATCGATAGTGTATAACATGAAATAAATCAGCATATTGAATCTATATATATATATATATTTTGATTGTGCAGGTGATTTTAGAGACCTCCAGGTTAGCAACAATAGTAAATGGGGTTTTGAGAAAAACAACTCAAGATATGGAAATAAATGGTAAGTACTATTTTGTGGGAAAATCTCATGCATGTTAAATTATAGTTTTTTATCCATTGATCGTTTTTCGCAAGTTATTCAAAGAATATCTACGCACTAACTTCGTTTATGTGATCTTTAAAAGTAAAGATAAGCCGATGATTTAACATTCCAATTATTATTATATATAAAACTTAAAATTAATGTTTATTTGTTATGGTATTTGAGTGATTTTGGTGAAATTATGAGCATCAGATGCAGGGACAATATTCTTCTAATTTAGACTGATTAAAATGTTTAAAATAATAATAGATGTATATAGTATATGATCATCTTTTGTGTTATGGACCCTCTAATACCACAATCCACATGGCACACCTACCATTCCAGCCTATACAGTTTCCCTTCCTGACCCATGTGTCGTCTCTTAAACTTTTTGGGAAAGTACAATTTCCCTAATATTATTTTTTCCCATCATATAATAATTTCATTAATTCACAACTTTTATGTATACTTGGTCTTATTATTACTTTTTTATGTGTATCTTTTTAGGGTATATCATTCCTAAAGGATGGAGAATATACGTATATACAAGGGAGTTGAATTACGATCCAAGACTTTATCCTGATCCATATTCGTTCAATCCATGGAGATGGATGGTTAGTATCGTTGAAAATCGCGCGTATCCTATATTATCTATGCTGAATTTGATTTTTAAATCGGAGTTAACAAATAATTATGGTTCTTATTATAGGATAAGAGCCTGGAACACCAAAACTCATTTTTGGTATTTGGAGGTGGTACTAGACAATGTCCTGGAAAGGAACTTGGTGTAGCAGAAATTTCCACATTTCTTCATTACTTCGTAACAAAATACAGGTATTTAATATATAAACATATATAATAAAAAAATTATTAATTTTATCTCGTATTTGATGATCTGTTACTAAATTGAAGTTGTATTATGGTTTATGCAGATGGGAAGAAATAGGTGGAGATAAACTGATGAAATTCCCAAGAGTTGAAGCACCAAATGGTCTACGGATTAGAGTTTCAGCTCACTAACTATCAATTCATGAATGTACAGAGAAAAAAAAATTCAAAAAAAAAAGAGAAGAGATTTGTAGGATGCAAAGCTAAGAGTAACATGGGATGTACAACTTAATTATTATTCCCGCTAACATAATCACGAATTAAACACAATTTTTTGCAGAGTTA
Download sequence region |
Get flanking sequences on SL2.50ch02
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mRNA Solyc02g089160.2.1 mRNA Solyc02g089160.2.1 |
Ontology terms Ontology terms | terms associated with this mRNA |
cDNA sequence cDNA sequence | spliced cDNA sequence, including UTRs |
>Solyc02g089160.2.1 Cytochrome P450
TGACTCTCTCTTGTGAAGTATAAAGGCAAGTAAAGAAGTCCATACCATTTAGACTACTACTCTGTCTGTGAGGTGGTTTGGTAACTTCTTTTGAAATTTTGAGGTGCATCAATGGCCTTCTTCTTAATTTTTCTTTCATCCTTTTTTGGCCTATGTATCTTTTGTACTGCTTTATTAAGATGGAATCAAGTCAAGTATAACCAAAAAAACTTGCCCCCTGGTACTATGGGTTGGCCACTTTTTGGTGAAACTACTGAGTTTCTTAAACTTGGTCCAAGTTTCATGAAAAACCAAAGAGCCAGATATGGGAGTTTTTTTAAATCACACATACTTGGTTGTCCAACAATTGTTTCAATGGATTCAGAACTGAACAGATATATACTAGTGAATGAAGCGAAAGGACTGGTCCCAGGATACCCACAGTCTATGATAGATATTTTAGGAAAATGTAATATTGCAGCTGTCAATGGTTCAGCTCACAAGTACATGAGGGGTGCATTGTTATCCCTAATTAGCCCTACAATGATCAGAGACCAACTTTTGCCTAAAATTGATGAGTTTATGAGATCCCACTTAACCAATTGGGATAATAAAGTTATTGACATTCAAGAGAAAACCAATAAGATGGCATTTCTATCATCGTTGAAGCAAATTGCTGGTATTGAATCTACCTCTTTAGCTCAAGAATTCatgtctgaaTTTTTCAATCTAGTGCTAGGCACTCTTTCACTACCTATCAATCTTCCAAACACCAACTATCATCGCGGATTTCAGGCAAGGAAAATTATTGTGAACTTATTACGAACACTCATAGAAGAGAGAAGAGCTTCAAAGGAAATTCAACATGATATGCTTGGTTACCTGATGAATGAGGAAGCAACACGATTCAAATTAACAGATGATGAGATGATTGATTTAATTATAACTATTTTGTACTCTGGATATGAAACTGTTTCCACCACTTCTATGATGGCTGTGAAATATCTTCATGATCATCCAAAAGTTCTTGAAGAACTTAGAAAAGAACACATGGCTATTAGAGAAAAGAAAAAACCTGAGGATCCTATCGATTACAACGATTACAGGTCAATGCGGTTCACACGAGCTGTGATTTTAGAGACCTCCAGGTTAGCAACAATAGTAAATGGGGTTTTGAGAAAAACAACTCAAGATATGGAAATAAATGGGTATATCATTCCTAAAGGATGGAGAATATACGTATATACAAGGGAGTTGAATTACGATCCAAGACTTTATCCTGATCCATATTCGTTCAATCCATGGAGATGGATGGATAAGAGCCTGGAACACCAAAACTCATTTTTGGTATTTGGAGGTGGTACTAGACAATGTCCTGGAAAGGAACTTGGTGTAGCAGAAATTTCCACATTTCTTCATTACTTCGTAACAAAATACAGATGGGAAGAAATAGGTGGAGATAAACTGATGAAATTCCCAAGAGTTGAAGCACCAAATGGTCTACGGATTAGAGTTTCAGCTCACTAACTATCAATTCATGAATGTACAGAGAAAAAAAAATTCAAAAAAAAAAGAGAAGAGATTTGTAGGATGCAAAGCTAAGAGTAACATGGGATGTACAACTTAATTATTATTCCCGCTAACATAATCACGAATTAAACACAATTTTTTGCAGAGTTA
TGACTCTCTCTTGTGAAGTATAAAGGCAAGTAAAGAAGTCCATACCATTTAGACTACTACTCTGTCTGTGAGGTGGTTTGGTAACTTCTTTTGAAATTTTGAGGTGCATCAATGGCCTTCTTCTTAATTTTTCTTTCATCCTTTTTTGGCCTATGTATCTTTTGTACTGCTTTATTAAGATGGAATCAAGTCAAGTATAACCAAAAAAACTTGCCCCCTGGTACTATGGGTTGGCCACTTTTTGGTGAAACTACTGAGTTTCTTAAACTTGGTCCAAGTTTCATGAAAAACCAAAGAGCCAGATATGGGAGTTTTTTTAAATCACACATACTTGGTTGTCCAACAATTGTTTCAATGGATTCAGAACTGAACAGATATATACTAGTGAATGAAGCGAAAGGACTGGTCCCAGGATACCCACAGTCTATGATAGATATTTTAGGAAAATGTAATATTGCAGCTGTCAATGGTTCAGCTCACAAGTACATGAGGGGTGCATTGTTATCCCTAATTAGCCCTACAATGATCAGAGACCAACTTTTGCCTAAAATTGATGAGTTTATGAGATCCCACTTAACCAATTGGGATAATAAAGTTATTGACATTCAAGAGAAAACCAATAAGATGGCATTTCTATCATCGTTGAAGCAAATTGCTGGTATTGAATCTACCTCTTTAGCTCAAGAATTCatgtctgaaTTTTTCAATCTAGTGCTAGGCACTCTTTCACTACCTATCAATCTTCCAAACACCAACTATCATCGCGGATTTCAGGCAAGGAAAATTATTGTGAACTTATTACGAACACTCATAGAAGAGAGAAGAGCTTCAAAGGAAATTCAACATGATATGCTTGGTTACCTGATGAATGAGGAAGCAACACGATTCAAATTAACAGATGATGAGATGATTGATTTAATTATAACTATTTTGTACTCTGGATATGAAACTGTTTCCACCACTTCTATGATGGCTGTGAAATATCTTCATGATCATCCAAAAGTTCTTGAAGAACTTAGAAAAGAACACATGGCTATTAGAGAAAAGAAAAAACCTGAGGATCCTATCGATTACAACGATTACAGGTCAATGCGGTTCACACGAGCTGTGATTTTAGAGACCTCCAGGTTAGCAACAATAGTAAATGGGGTTTTGAGAAAAACAACTCAAGATATGGAAATAAATGGGTATATCATTCCTAAAGGATGGAGAATATACGTATATACAAGGGAGTTGAATTACGATCCAAGACTTTATCCTGATCCATATTCGTTCAATCCATGGAGATGGATGGATAAGAGCCTGGAACACCAAAACTCATTTTTGGTATTTGGAGGTGGTACTAGACAATGTCCTGGAAAGGAACTTGGTGTAGCAGAAATTTCCACATTTCTTCATTACTTCGTAACAAAATACAGATGGGAAGAAATAGGTGGAGATAAACTGATGAAATTCCCAAGAGTTGAAGCACCAAATGGTCTACGGATTAGAGTTTCAGCTCACTAACTATCAATTCATGAATGTACAGAGAAAAAAAAATTCAAAAAAAAAAGAGAAGAGATTTGTAGGATGCAAAGCTAAGAGTAACATGGGATGTACAACTTAATTATTATTCCCGCTAACATAATCACGAATTAAACACAATTTTTTGCAGAGTTA
Protein sequence Protein sequence | translated polypeptide sequence |
>Solyc02g089160.2.1 Cytochrome P450
MAFFLIFLSSFFGLCIFCTALLRWNQVKYNQKNLPPGTMGWPLFGETTEFLKLGPSFMKNQRARYGSFFKSHILGCPTIVSMDSELNRYILVNEAKGLVPGYPQSMIDILGKCNIAAVNGSAHKYMRGALLSLISPTMIRDQLLPKIDEFMRSHLTNWDNKVIDIQEKTNKMAFLSSLKQIAGIESTSLAQEFMSEFFNLVLGTLSLPINLPNTNYHRGFQARKIIVNLLRTLIEERRASKEIQHDMLGYLMNEEATRFKLTDDEMIDLIITILYSGYETVSTTSMMAVKYLHDHPKVLEELRKEHMAIREKKKPEDPIDYNDYRSMRFTRAVILETSRLATIVNGVLRKTTQDMEINGYIIPKGWRIYVYTRELNYDPRLYPDPYSFNPWRWMDKSLEHQNSFLVFGGGTRQCPGKELGVAEISTFLHYFVTKYRWEEIGGDKLMKFPRVEAPNGLRIRVSAH*
MAFFLIFLSSFFGLCIFCTALLRWNQVKYNQKNLPPGTMGWPLFGETTEFLKLGPSFMKNQRARYGSFFKSHILGCPTIVSMDSELNRYILVNEAKGLVPGYPQSMIDILGKCNIAAVNGSAHKYMRGALLSLISPTMIRDQLLPKIDEFMRSHLTNWDNKVIDIQEKTNKMAFLSSLKQIAGIESTSLAQEFMSEFFNLVLGTLSLPINLPNTNYHRGFQARKIIVNLLRTLIEERRASKEIQHDMLGYLMNEEATRFKLTDDEMIDLIITILYSGYETVSTTSMMAVKYLHDHPKVLEELRKEHMAIREKKKPEDPIDYNDYRSMRFTRAVILETSRLATIVNGVLRKTTQDMEINGYIIPKGWRIYVYTRELNYDPRLYPDPYSFNPWRWMDKSLEHQNSFLVFGGGTRQCPGKELGVAEISTFLHYFVTKYRWEEIGGDKLMKFPRVEAPNGLRIRVSAH*
Gene model matches Gene model matches |
SGN Unigenes SGN Unigenes | [Associate new unigene] |
Unigene ID:
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GenBank accessions GenBank accessions | [Associate new genbank sequence] |
U54770 Solanum lycopersicum cytochrome P450 homolog (Dwarf) mRNA, complete cds.
DQ374442 Lycopersicon esculentum cultivar Micro-Tom 6-deoxocastasterone oxidase (Dwarf) mRNA, complete cds.
DQ374443 Lycopersicon esculentum cultivar Micro-Tom 6-deoxocastasterone oxidase (Dwarf) mRNA, complete cds.
DQ374447 Lycopersicon esculentum cultivar Madrigal 6-deoxocastasterone oxidase (Dwarf) mRNA, complete cds.
DQ374442 Lycopersicon esculentum cultivar Micro-Tom 6-deoxocastasterone oxidase (Dwarf) mRNA, complete cds.
DQ374443 Lycopersicon esculentum cultivar Micro-Tom 6-deoxocastasterone oxidase (Dwarf) mRNA, complete cds.
DQ374447 Lycopersicon esculentum cultivar Madrigal 6-deoxocastasterone oxidase (Dwarf) mRNA, complete cds.
Other genome matches | None |
Literature annotations [4] Literature annotations [4] | [Associate publication] [Matching publications] |
The tomato Dwarf gene isolated by heterologous transposon tagging encodes the first member of a new cytochrome P450 family.
The Plant cell (1996)
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To transposon tag the tomato Dwarf (D) gene, a tomato line that carries a T-DNA containing a maize Activator (Ac) transposable element closely linked to D was pollinated with a stock homozygous for the d mutation. Hybrid seedlings were screened for dwarf progeny, and three independent dwarf lines were obtained. Two of these lines showed inheritance of a recessive phenotype similar to that conferred by the extreme dwarf (dx) allele. Variegation for the dwarf phenotype in one of these lines suggested that D had been tagged by Ac. Genomic DNA adjacent to Ac in these two lines was isolated by use of the inverse polymerase chain reaction, and the two insertions mapped approximately 2 kb apart. Partial complementation of d was observed when the corresponding wild-type sequence was used in transformation experiments. A cDNA clone of D was sequenced, and the predicted amino acid sequence has homology to cytochrome P450 enzymes.
Bishop, GJ. Harrison, K. Jones, JD.
The Plant cell.
1996.
8(6).
959-69.
The last reaction producing brassinolide is catalyzed by cytochrome P-450s, CYP85A3 in tomato and CYP85A2 in Arabidopsis.
The Journal of biological chemistry (2005)
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Brassinosteroids are steroidal hormones essential for the growth and development of plants. Brassinolide, the most biologically active brassinosteroid, has a seven-membered lactone ring that is formed by a Baeyer-Villiger oxidation of its immediate precursor castasterone. Despite its potential key role in controlling plant development, brassinolide synthase has not been identified. Previous work has shown that the formation of castasterone from 6-deoxocastasterone is catalyzed by members of the CYP85A family of cytochrome P-450 monooxygenases. A null mutation in the tomato Dwarf (CYP85A1) gene, extreme dwarf (d(x)), causes severe dwarfism due to brassinosteroid deficiency, but the d(x) mutant still produces fruits. Here, we show that d(x) fruits contain brassinolide at a higher level than wild-type fruits and that a new CYP85A gene, CYP85A3, is preferentially expressed in tomato fruits. Tomato CYP85A3 catalyzed the Baeyer-Villiger oxidation to produce brassinolide from castasterone in yeast, in addition to the conversion of 6-deoxocastasterone to castasterone. We also show that Arabidopsis CYP85A2, which was initially characterized as castasterone synthase, also has brassinolide synthase activity. Exogenous application of castasterone and brassinolide to the Arabidopsis cyp85a1/cyp85a2 double mutant suggests that castasterone can function as an active brassinosteroid but that its conversion into brassinolide is necessary for normal vegetative development in Arabidopsis. We postulate that castasterone is the major active brassinosteroid during vegetative growth in tomato, whereas brassinolide may play an organ-specific role in fruit development in this species.
Nomura, T. Kushiro, T. Yokota, T. Kamiya, Y. Bishop, GJ. Yamaguchi, S.
The Journal of biological chemistry.
2005.
280(18).
17873-9.
Patterns of Dwarf expression and brassinosteroid accumulation in tomato reveal the importance of brassinosteroid synthesis during fruit development.
The Plant journal : for cell and molecular biology (2005)
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Brassinosteroids (BRs) are essential for many physiological functions in plants, however little is known concerning where and when they are synthesized. This is especially true during flower and fruit production. To address this we have used a promoter-GUS reporter fusion and RT-PCR to determine the relative expression levels of the tomato Dwarf (D) gene that encodes a BR C-6 oxidase. In young seedlings GUS reporter activity was observed mainly in apical and root tissues undergoing expansion. In flowers GUS activity was observed in the pedicel joints and ovaries, whereas in fruits it was strongest during early seed development and was associated with the locular jelly and seeds. RT-PCR analysis showed that tissue-specific expression of Dwarf mRNA was consistent with that of the Dwarf:GUS fusion. In good correlation with the high local Dwarf activity, quantitative measurements of endogenous BRs indicated intense biosynthesis in developing tomato fruits, which were also found to contain high amounts of brassinolide. Grafting experiments showed the lack of BR transport indicating that BR action occurs at the site of synthesis.
Montoya, T. Nomura, T. Yokota, T. Farrar, K. Harrison, K. Jones, JD. Jones, JG. Kaneta, T. Kamiya, Y. Szekeres, M. Bishop, GJ.
The Plant journal : for cell and molecular biology.
2005.
42(2).
262-9.
Genetic and physiological characterization of tomato cv. Micro-Tom.
Journal of experimental botany (2006)
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Based on its compact habit, Micro-Tom, a dwarf cultivar of tomato (Solanum lycopersicum L.), has been proposed as a preferred variety to carry out molecular research in tomato. This cultivar, however, is poorly characterized. It is shown here that Micro-Tom has mutations in the SELF-PRUNING (SP) and DWARF (D) genes. In addition to this, it is also shown that Micro-Tom harbours at least two independently segregating resistance loci to the plant pathogen Cladosporium fulvum. The presence of the self-pruning mutation in Micro-Tom, that generates a determinate phenotype, was confirmed by crossing and sequence analysis. It was also found that Micro-Tom has a mutation in the DWARF gene (d) that leads to mis-splicing and production of at least two shorter mRNAs. The d mutation is predicted to generate truncated DWARF protein. The d sequence defect co-segregates with dark-green and rugose leaves, characteristics of brassinosteroid biosynthesis mutants. Micro-Tom also carries at least another mutation producing internode length reduction that affects plant height but not active gibberellin (GA) levels, which were similar in dwarf and tall Micro-TomxSeverianin segregants. GAs and brassinosteroids act synergistically in Micro-Tom, and the response to GA depends on brassinosteroids because the elongation of internodes was at least six times higher when GA(3) was applied simultaneously with brassinolide. A novel variety, Micro-0 that is fully susceptible to C. fulvum and almost as dwarf as Micro-Tom, has been generated from the cross of Cf0xMicro-Tom. This line represents a valuable resource for future analysis of Cf resistance genes through breeding or transformation.
Martí, E. Gisbert, C. Bishop, GJ. Dixon, MS. García, Martínez.
Journal of experimental botany.
2006.
57(9).
2037-47.
Ontology annotations (7) Ontology annotations (7) | [Add ontology annotations] |
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