EST details — SGN-C179093
| Search information |
| Request: 179093 | Match: SGN-C179093 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C179093 | Clone name: TUS-30-N19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179093 is on microarray TOM1 spot ID 1-1-6.2.2.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C78782 [cLES-6-L8] | Trace: SGN-T98521 | EST: SGN-E287069 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179093 [TUS-30-N19] | Trace: SGN-T184806 | EST: SGN-E372366 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E372367 | Length: 710 bp (913 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E372367 [] (trimmed)
TGAGGCTGGAACACCGCTTATGTGGGCTGCAGGTTTCGGCCAGGAAGAGGTTGTCAAGGTTTTGCTGGAACATCATGCTAATGTTCATACTCAAA
CAGAAGATGAAAATAATGTCTGTCCTTTGGTATCAGCTGTAGCAACCGATTCATTGCCTTGCCTTTGCTCATTGCTGCTCATAATGGTAGTGCAG
GAGTCATTAACTGCTTACTACAAGCTGGAGCTGATCCGAATGCGGCTGAGGAGGATGGTACCAAGCCAATACAAGTTGCAGCTGCAAGCGGCAGT
AGGGAAGCTGTTGAAGCTTTATTGCCTGTCACAGAACGGATTCAGAGTGTTCCAGAATGGAGTGTGGATGGAGTGATTGAGTTTGTGCAATCTGA
ATATAAGAGAGAACAGGAAAGAGCAGAAGCTGGGAGGAAAGCAAACAAGTCAAGAGGACCTATTATTCCAAAGAAAGATTTACCTGAGGTGAGTC
CTGAAGCAAAGAAGAAAGCTGCAGATGCAAAGGCGAGGGCAGACGAGGCATTTAATAGGAAAGATTTTGCTACAGCTATAGATACTTACACGCAG
GCAATCGATTTTGATCCAACTGATGGCACTCTGTTTTCCAATAGAAGTCTTTGTTGGCTCCGCCTGGGCCAAGCTGAACGCGCCTTAAGTGATGC
CAGGGCCTGCAGAGAACTTAGACCCGATTGGGCAAAAGGTTGTTA
CAGAAGATGAAAATAATGTCTGTCCTTTGGTATCAGCTGTAGCAACCGATTCATTGCCTTGCCTTTGCTCATTGCTGCTCATAATGGTAGTGCAG
GAGTCATTAACTGCTTACTACAAGCTGGAGCTGATCCGAATGCGGCTGAGGAGGATGGTACCAAGCCAATACAAGTTGCAGCTGCAAGCGGCAGT
AGGGAAGCTGTTGAAGCTTTATTGCCTGTCACAGAACGGATTCAGAGTGTTCCAGAATGGAGTGTGGATGGAGTGATTGAGTTTGTGCAATCTGA
ATATAAGAGAGAACAGGAAAGAGCAGAAGCTGGGAGGAAAGCAAACAAGTCAAGAGGACCTATTATTCCAAAGAAAGATTTACCTGAGGTGAGTC
CTGAAGCAAAGAAGAAAGCTGCAGATGCAAAGGCGAGGGCAGACGAGGCATTTAATAGGAAAGATTTTGCTACAGCTATAGATACTTACACGCAG
GCAATCGATTTTGATCCAACTGATGGCACTCTGTTTTCCAATAGAAGTCTTTGTTGGCTCCGCCTGGGCCAAGCTGAACGCGCCTTAAGTGATGC
CAGGGCCTGCAGAGAACTTAGACCCGATTGGGCAAAAGGTTGTTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E372367] | SGN-U578144 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T184807 [Download][View] | Facility Assigned ID: FA0AAD18CG10RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0028 | Quality Trim Threshold: 14.5 |
Working
