EST details — SGN-E390480
| Search information |
| Request: 390480 | Match: SGN-E390480 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182795 | Clone name: TUS-40-I1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182795 is on microarray TOM1 spot ID 1-1-8.1.6.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C112199 [cTOA-14-H3] | Trace: SGN-T125820 | EST: SGN-E312977 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182795 [TUS-40-I1] | Trace: SGN-T191590 | EST: SGN-E390264 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E390480 | Length: 698 bp (873 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E390480 [] (trimmed)
AAATCATCAAAATTCAAAATGTGTCGCGCAAATTCAGACGGAGGGAGTAAACAATACATGCATTTCATTATCAAGAAGAAATACTCAGCTAACAT
CCAAATGCTCGATGATTTCAAAGTGTATCTGGAGATCAGGGAGCTTATTACCAAAATACAATCTTTCACGTATATACAATTTCCCCATATTCTTC
CGAGTTGCTTCTTTGAGAAGCCGAAAAAACTCATCTTTCTCCTTCCGGATCCAAATCCTGTCACGATCACACCATTGTCTAGGAGTTCCATGAAG
GAAAAAACGAATTCCAGGGGCTCCTTGGACGAAGCGATCAGAAATTCTGTGAATGACATCTTGGTTGGTTACATATGCTCCCTCTGTGTTTAGAC
CAACATCTACGTAATGGAACTCAGCTATACTATTTAATAAGCCATCTTTAGAATTTGGAATAATCTGATCTTGTGGCTGGGAGGAATATCCTCCA
TTTGTGACATTCTTGTTTGCTAACGGCACGTCTTCAGTGAGCTGGACTGGTGCAAAACCAAGCTCAGCAACCAGCTGGTTGAGTACAGTACCACC
CTTACTAAATCCAAGAAGTAAAGTTCTTGGTGTACTCAGAGATGATGTAGAAACTTCAGCTTGATAGGGCTCTTTTTGTTTCCCTGAGATGACAC
TTTTTGCCTCTTTTAAACAATTCCACAAAAGCA
CCAAATGCTCGATGATTTCAAAGTGTATCTGGAGATCAGGGAGCTTATTACCAAAATACAATCTTTCACGTATATACAATTTCCCCATATTCTTC
CGAGTTGCTTCTTTGAGAAGCCGAAAAAACTCATCTTTCTCCTTCCGGATCCAAATCCTGTCACGATCACACCATTGTCTAGGAGTTCCATGAAG
GAAAAAACGAATTCCAGGGGCTCCTTGGACGAAGCGATCAGAAATTCTGTGAATGACATCTTGGTTGGTTACATATGCTCCCTCTGTGTTTAGAC
CAACATCTACGTAATGGAACTCAGCTATACTATTTAATAAGCCATCTTTAGAATTTGGAATAATCTGATCTTGTGGCTGGGAGGAATATCCTCCA
TTTGTGACATTCTTGTTTGCTAACGGCACGTCTTCAGTGAGCTGGACTGGTGCAAAACCAAGCTCAGCAACCAGCTGGTTGAGTACAGTACCACC
CTTACTAAATCCAAGAAGTAAAGTTCTTGGTGTACTCAGAGATGATGTAGAAACTTCAGCTTGATAGGGCTCTTTTTGTTTCCCTGAGATGACAC
TTTTTGCCTCTTTTAAACAATTCCACAAAAGCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E390480] | SGN-U571499 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T191806 [Download][View] | Facility Assigned ID: FA0AAD28AE01FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0066 | Quality Trim Threshold: 14.5 |
Working
