EST details — SGN-E390582
| Search information |
| Request: 390582 | Match: SGN-E390582 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C184429 | Clone name: TUS-44-M3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184429 is on microarray TOM1 spot ID 1-1-6.1.16.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C15853 [cLED-14-D15] | Trace: SGN-T52143 | EST: SGN-E233789 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C184429 [TUS-44-M3] | Trace: SGN-T192138 | EST: SGN-E390812 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E390582 | Length: 491 bp (850 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E390582 [] (trimmed)
CAGATTAAAAGAAGACAAGGTACTAGTAATCAATTATCCATCATGGCTGTTCACAAGGAAGTTAATTTTGTCGCTTACCTACTAATTGTTCTTGG
AATGTTTCTATATGTTGATGCCAAGGCTTGTACTAGAGAATGTGGTAATCTTGGGTTCGGGATATGCCCACGTTCAGAAGGAAGTCCGCTAAATC
CCATATGCATCAATTGTTGCTCAGGCTATAAGGGTTGTAATTATTATAATTCTTTCGGAAAATTTATTTGTGAAGGAGAATCTGATCCAAAAAGG
CCAAATGCTTGCACCTTTAATTGTGATCCAAATATTGCCTATTCAAGATGTCCCCGTTCACAAGGAAAATCGTTAATTTATCCCACCGGATGTAC
CACATGTTGCACAGGGTACAAGGGTTGCTATTATTTTGGTAAAGATGGAAAGTTTGTATGTGAAGGAGAGAGTGATGAACCCAAGGCAAATATGT
ACCCTGTAATGTGACT
AATGTTTCTATATGTTGATGCCAAGGCTTGTACTAGAGAATGTGGTAATCTTGGGTTCGGGATATGCCCACGTTCAGAAGGAAGTCCGCTAAATC
CCATATGCATCAATTGTTGCTCAGGCTATAAGGGTTGTAATTATTATAATTCTTTCGGAAAATTTATTTGTGAAGGAGAATCTGATCCAAAAAGG
CCAAATGCTTGCACCTTTAATTGTGATCCAAATATTGCCTATTCAAGATGTCCCCGTTCACAAGGAAAATCGTTAATTTATCCCACCGGATGTAC
CACATGTTGCACAGGGTACAAGGGTTGCTATTATTTTGGTAAAGATGGAAAGTTTGTATGTGAAGGAGAGAGTGATGAACCCAAGGCAAATATGT
ACCCTGTAATGTGACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E390582] | SGN-U578366 | Tomato 200607 | Build 2 | 209 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T191908 [Download][View] | Facility Assigned ID: FA0AAD32AG02RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |
Working
