EST details — SGN-E394960
| Search information |
| Request: 394960 | Match: SGN-E394960 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C180454 | Clone name: TUS-34-G12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180454 is on microarray TOM1 spot ID 1-1-5.3.19.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C30061 [cLEF-56-F1] | Trace: SGN-T63780 | EST: SGN-E249651 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C180454 [TUS-34-G12] | Trace: SGN-T196285 | EST: SGN-E394959 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394960 | Length: 576 bp (859 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394960 [] (trimmed)
TAAGCATCTCTTTCTCTCTCTATAACACTCACAAAATCCATATTTACACAACAAAAAAAATTTAAGTTTGATGGATAAATTAATCAATCAAGAAA
ATAATATTGATAAAGAAATTATGGAGCTTAGAAGAGGTCCATGGACTGTTGAAGAAGATTTAGTTCTTATGAATTATATTTCTCATCACGGTGAA
GGTCGTTGGAATTCACTCTCACGTTGTGCTGGTTTGAAGAGGACAGGAAAAAGTTGCAGGCTAAGATGGCTTAATTATCTTCGACCAGATGTTCG
ACATGGAAATATTACGCTTGAAGAACAACTCTTGATTCTTCAACTTCATTCTCGTTGGGGCAATAGGTATGTTCTTTAATTTGTTAAATAGATGA
CGTAAAAGAATTTTTACACTATTCAAATTATTTCTTATAGATTAAACACAAGGAATATCACCTTTTTATGAAAGATTACTATAGTTATATCATTA
CTAGACAACTTAATAATTAATGTAATGTCTATTGATCATATAGCACTTTCCTATTCAACCAATGTGAGTTTATTATGTTTTCTTTTTGTTGTTGT
TGGTGT
ATAATATTGATAAAGAAATTATGGAGCTTAGAAGAGGTCCATGGACTGTTGAAGAAGATTTAGTTCTTATGAATTATATTTCTCATCACGGTGAA
GGTCGTTGGAATTCACTCTCACGTTGTGCTGGTTTGAAGAGGACAGGAAAAAGTTGCAGGCTAAGATGGCTTAATTATCTTCGACCAGATGTTCG
ACATGGAAATATTACGCTTGAAGAACAACTCTTGATTCTTCAACTTCATTCTCGTTGGGGCAATAGGTATGTTCTTTAATTTGTTAAATAGATGA
CGTAAAAGAATTTTTACACTATTCAAATTATTTCTTATAGATTAAACACAAGGAATATCACCTTTTTATGAAAGATTACTATAGTTATATCATTA
CTAGACAACTTAATAATTAATGTAATGTCTATTGATCATATAGCACTTTCCTATTCAACCAATGTGAGTTTATTATGTTTTCTTTTTGTTGTTGT
TGGTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394960] | SGN-U576251 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196286 [Download][View] | Facility Assigned ID: FA0AAD22BD06RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.926 | Expected Error Rate: 0.0037 | Quality Trim Threshold: 14.5 |
Working
