EST details — SGN-E396177
| Search information |
| Request: 396177 | Match: SGN-E396177 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C174115 | Clone name: TUS-17-O9 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C174115 is on microarray TOM1 spot ID 1-1-8.3.17.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C7030 [cLEC-37-J17] | Trace: SGN-T31239 | EST: SGN-E208248 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C174115 [TUS-17-O9] | Trace: SGN-T1303 | EST: SGN-E378157 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C174115 [TUS-17-O9] | Trace: SGN-T191459 | EST: SGN-E390133 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E396177 | Length: 400 bp (913 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396177 [] (trimmed)
TGCCACAGCAAAATCTAATTTGTTAATTTTTGTTGATTTTATTTTATTATTATTTTGTGAGAAAATGACTATTCTCATTGAGCAGCCTGAATTTG
GATCACAAGTGGAGGAGAAAAAAGTCTCATTCAATGCCAATGAACTTATTTTGGATGGTGGATTTATGGTACCAAAGACATTGTCTTCTCAAGAT
GAAATATTTGAAGTGCCAGACATAAATGCATTTGGTCAATCATTTAGGGATTATAATGTAGAAAGTGAGAGACAAAAATCAGTGGAAGAATTTTA
TAGGGTTCAACACATTAATCAAACATATGACTATGTGAAAAAAATGAGAAAAGAATATGGAAAATTGAACAAAATTGATATGAGTATTTGGGATT
GTTGTGAACTTTTGAATGAT
GATCACAAGTGGAGGAGAAAAAAGTCTCATTCAATGCCAATGAACTTATTTTGGATGGTGGATTTATGGTACCAAAGACATTGTCTTCTCAAGAT
GAAATATTTGAAGTGCCAGACATAAATGCATTTGGTCAATCATTTAGGGATTATAATGTAGAAAGTGAGAGACAAAAATCAGTGGAAGAATTTTA
TAGGGTTCAACACATTAATCAAACATATGACTATGTGAAAAAAATGAGAAAAGAATATGGAAAATTGAACAAAATTGATATGAGTATTTGGGATT
GTTGTGAACTTTTGAATGAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E396177] | SGN-U565448 | Tomato 200607 | Build 2 | 53 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T197503 [Download][View] | Facility Assigned ID: FA0AAD5AH05FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.918 | Expected Error Rate: 0.0052 | Quality Trim Threshold: 20.5 |
Working
