EST details — SGN-E397248
| Search information |
| Request: 397248 | Match: SGN-E397248 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C184729 | Clone name: TUS-45-I15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184729 is on microarray TOM1 spot ID 1-1-2.1.14.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C80006 [cLET-10-P13] | Trace: SGN-T104934 | EST: SGN-E290765 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C184729 [TUS-45-I15] | Trace: SGN-T198492 | EST: SGN-E397166 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E397248 | Length: 425 bp (884 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E397248 [] (trimmed)
GAGAAAATTTTACTACTATTATTGTAAGGTCTTCACTACTGATTTTGGCTTACATCAATTTCGAACGACATTCAATTAATTCCACTCAACAAAAT
GACAGAACACAATAACCAAAATATGTCACAGCAAAGATGCCAGATGATACTCCATTACAAGAGGGATCCATTGATAGTACCCAATGCAGAATCAG
AAATTACAGTAAAATTATTCAGCAAACACTCTTTCCTAAAATCCAACTATAACGACTCCATGGCATATATGAACCGTCAAGATAATGATGATGCT
GATCCTTTTTATGTCATGTCTGAGTTAAAGTTATGCCTTGCTATCAATGCTCATCGGCTCTGGTTCCTTGGGAGCAGAGTTGGCTGAGTTTGATG
AATCCTGCTTATTCAACTTTGCAAACATGTTCCCGTAAAACTTTG
GACAGAACACAATAACCAAAATATGTCACAGCAAAGATGCCAGATGATACTCCATTACAAGAGGGATCCATTGATAGTACCCAATGCAGAATCAG
AAATTACAGTAAAATTATTCAGCAAACACTCTTTCCTAAAATCCAACTATAACGACTCCATGGCATATATGAACCGTCAAGATAATGATGATGCT
GATCCTTTTTATGTCATGTCTGAGTTAAAGTTATGCCTTGCTATCAATGCTCATCGGCTCTGGTTCCTTGGGAGCAGAGTTGGCTGAGTTTGATG
AATCCTGCTTATTCAACTTTGCAAACATGTTCCCGTAAAACTTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E397248] | SGN-U567765 | Tomato 200607 | Build 2 | 114 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T198574 [Download][View] | Facility Assigned ID: FA0AAD33AE08FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.957 | Expected Error Rate: 0.0031 | Quality Trim Threshold: 14.5 |
Working
