SGN Marker TG176
SGN-M139
Synonyms |
Locus associations |
RFLP details |
Insert size
1300
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image |
Forward sequence
AACAGATTATCAAAATGATATACTCTAAAAAAAGAAGATACAAGAGTGTCAATGGCAGCAAATAAGCTAATGAAACTAATTGCTTGTAAC
AAGTTATGAACACAAAACCTGTGCAGGCTGTTGAACCGCATTTACACCAGGCATGCCACTTTGAGATGTAGATTCTACAGAAAAGACATC AGCCGGTTGACCTGCAATTAGTAGGCACAGTGTCCGCAAAGGTGACCCTGCTACTAACTGTTGAAGTGCCATTTGCTTCACCGTTTCTAC ATAGAACTACAATTATGCAAGAAATCAAAAATATATTGATAGAAATAACCACACACACACACATGTATAATTGAGACATAGAGAGAGAGA GAGAGAGAGAGAGAGAGCGAGAGAGTGAGAGAGGAGGAAGAAGAGGCTGGGTGCCAAAGGGAAACTAAGAACTAGACAAACCTGATCCCC AAGTTGTGCAGCAAGAACAAGAGCTG |
Reverse sequence
TTAAACAAATAAATAGTAGTGGTAGTAATAGCACTGCCCCACATATAATAACCAAGAGAGAAGAAATTGTAATTAGGAGCTCGCATAATC
ATGTGAGCAGAGCTATGAAGTAGGTTAGATATTGGGCTCTGAACTCTGGAGGAATTTGGGGGGATGTGTTTCTTTGATTTCAACTACAGA AATACATGAAGCCTCGAGTCAATTGTCATTTGAAGAAATCTTTTGTTAGAATTAACACCATAGCTTGTGGTACTGTAATACCTTTTACAA ACTAGGAAAGAGTATTGATGTTCTAGCTGTTACATTTTTGATGAACTTATGTAATTTATTCTCTTCACAATATTTGGCTAAACTTGCCGA AGTTTGCTAAGCTTGCTTTTTTGTGTTCCCTTTTTACCTTGTCAAAAGAAAGTATGTAAAGGTATGTCTTCCTTTTTTTAATGCATTTTA GATTTTTCATTTTGTACAATCATCTAGCTTGATAGCGTGAAAA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U148781 | 4.4e-63 | 145 (30.5% of RFLP seq) | + |
Mapped locations |
| Tomato-EXPIMP 2009 |
| Potato meta-QTL consensus map |
| Tomato - Kazusa and SolCAP markers mapped to genome |
| Kazusa F2-2000 genetic map |
| Sun1642 x LA1589 |
| Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589 |
| Tomato-EXPIMP 2008 |
|
| Tomato-EXPEN 2000 |
| Pepper-AC99 |
| Tomato-EXPEN 1992 |
| Potato-TXB 1992 |
| Tomato-EXPIMP 2001 |
Overgo hybridization and physical mapping |
TG176 was used as an overgo probe on plate 1 [well A8]
Plausible BAC Matches: P270A17, P268N07
Overgo Sequences
A sequence
AAAACCTGTGCAGGCTGTTGAACC
|
B sequence
TGCCTGGTGTAAATGCGGTTCAAC
|
AB sequence
AAAACCTGTGCAGGCTGTTGAACCGCATTT
|
Marker sequence
AACAGATTATCAAAATGATATACTCTAAAAAAAGAAGATACAAGAGTGTC
AATGGCAGCAAATAAGCTAATGAAACTAATTGCTTGTAACAAGTTATGAA CACAAAACCTGTGCAGGCTGTTGAACCGCATTTACACCAGGCATGCCACT TTGAGATGTAGATTCTACAGAAAAGACATCAGCCGGTTGACCTGCAATTA GTAGGCACAGTGTCCGCAAAGGTGACCCTGCTACTAACTGTTGAAGTGCC ATTTGCTTCACCGTTTCTACATAGAACTACAATTATGCAAGAAATCAAAA ATATATTGATAGAAATAACCACACACACACACATGTATAATTGAGACATA GAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGTGAGAGAGGAGGAAG AAGAGGCTGGGTGCCAAAGGGAAACTAAGAACTAGACAAACCTGATCCCC AAGTTGTGCAGCAAGAACAAGAGCTG |
Marker Submitted By |
Name: Molly Jahn
Organization: Cornell University
Organization: Cornell University
Related Markers |
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG176 |
User comments |
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