SGN Marker CT171
SGN-M157
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
1600
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
|
Forward sequence
GAGAAGCGGATAAGACCAGAGGTTATACCTTCACATGAGATTGGAGTGACATTTGCAGATATTGGTGCCCTAGATGAAACTAAGGAATCA
CTTCAGGAGCTAGTCATGCTTCCTCTTAGAAGACCTGACCTCTTCAACGGTGGACTGCTTAAGCCTTGCAGAGGTATACTACTCTTTGGT CCACCTGGCACTGGGAAGACTATGCTGGCCAAAGCAATAGCCAATGAAGCTGGAGCAAGCTTTATAAATGTCTCAATGTCAACCATTACT TCAAAATGGTTTGGGGAAGATGAAAAGAATGTCCGAGCTCTTTTCACACTTGCAGCAAAGGTTTCTCCAACGATTGTTTTTGTGGATGAG GTTGATAGCATGCTAGGGCAGCGGACAAGAGTTGGAGAACACGAGGCTATGCGAAAAATTAAGAATGAGTTTATGACTCATTGGGATGGA TTA |
|
Reverse sequence
not available
|
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U166928 | 5e-41 | 224 (49.4% of RFLP seq) | + |
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 2000 |
|  Tomato-EXHIR 1997 |
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
CT171 was used as an overgo probe on plate 3 [well A9]
Plausible BAC Matches: None
Overgo Sequences
|
A sequence
GGAGCTAGTCATGCTTCCTCTTAG
|
|
B sequence
GAAGAGGTCAGGTCTTCTAAGAGG
|
|
AB sequence
GGAGCTAGTCATGCTTCCTCTTAGAAGACC
|
|
Marker sequence
GAGAAGCGGATAAGACCAGAGGTTATACCTTCACATGAGATTGGAGTGAC
ATTTGCAGATATTGGTGCCCTAGATGAAACTAAGGAATCACTTCAGGAGC TAGTCATGCTTCCTCTTAGAAGACCTGACCTCTTCAACGGTGGACTGCTT AAGCCTTGCAGAGGTATACTACTCTTTGGTCCACCTGGCACTGGGAAGAC TATGCTGGCCAAAGCAATAGCCAATGAAGCTGGAGCAAGCTTTATAAATG TCTCAATGTCAACCATTACTTCAAAATGGTTT |
| Related Markers
|
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of CT171
|
| User comments |
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