SGN Marker T0772
SGN-M1596
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 99
Tomato EST read: None
Arabidopsis best BAC match: AL049659.2
Arabidopsis position: 3.1140000
Arabidopsis identities: 0.828
Best GenBank protein hit: CAB41156.1
Evalue: 4.1e-34
Identities: 0.821
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: None
Arabidopsis best BAC match: AL049659.2
Arabidopsis position: 3.1140000
Arabidopsis identities: 0.828
Best GenBank protein hit: CAB41156.1
Evalue: 4.1e-34
Identities: 0.821
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T0772 was used as an overgo probe on plate 6 [well H3]
Plausible BAC Matches: P064I21, P249J03, P065N07, P249M24, P123N09, P143C19, P286B15, P011L07, P082F22, P138J02, P077H09, P191N05, P065M23, P280F08, P185O10, P189N04, P158G10, P153J02, P045L17, P067O14, P125M07, P159H13, P244C01, P114B14, P081J15, P176O07, P101O16, P174N09, P099O24, P066M12, P323K03, P175B10, P250P03, P160H08, P152L09, P250I18, P065I21, P103A09, P103A08, P099O23, P175B09, P250J11, P115D10, P073E05, P140O01
Non-Plausible BAC matches
P170B06,
P010L09,
P054F10,
P108K21,
P249H24,
P108N23,
P250I15,
P271K19,
P077K10,
P031K11,
P165F11,
P076F20,
P176J15,
P244O09,
P026G09,
P170B07,
P137A03,
P275A18,
P161D15,
P098C19,
P076M13,
P082G20,
P077F10,
P142N06,
P284G03,
P163M15,
P166L04,
P161D16,
P162B16,
P030F10,
P080C23,
P289J20,
P296I22,
P250J14,
P142J15,
P122C17,
P137C03,
P116G09,
P044H11,
P028D05,
P050H06,
P128E10,
P108F01,
P113D16
Overgo Sequences
|
A sequence
AAGGCACTGCTATTCGACTGCGAT
|
|
B sequence
TATCGACAAGTACGCCATCGCAGT
|
|
AB sequence
AAGGCACTGCTATTCGACTGCGATGGCGTA
|
|
Marker sequence
CAAGACGAGTAGGCGTAGTGGAGTAGTGACATGTTCTGCTTCGGTCCTCC
CAAAGGCACTGCTATTCGACTGCGATGGCGTACTTGTCGATACTGAAAAA GAAGGGCATCGGATCTCTTTCAATGATACCTTTTCTGAGAAGGAATTGGG TGTAACTTGGGATGTTGATTTGTATGGAGAATTACTCAAAATTGGAGGTG GAAAAGAAAGGATGACAGCCTACTTTAACAAAATAGGTTGGCCAGAAAAT GC |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T0772
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| User comments |
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