SGN Marker T1038
SGN-M1716
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 6.13
Tomato EST read: TRXCA50TH
Arabidopsis best BAC match: AC007296.2
Arabidopsis position: 1.0360000
Arabidopsis identities: 0.681
Best GenBank protein hit: AAA81878.1
Evalue: 1.2e-88
Identities: 0.990
Description: clp-like energy-dependent protease [Lycopersicon esculentum]
Comment: "ATP-dependent Clp protease s located in the stroma, and is involved in the degradation of abnormal soluble and membrane-bound proteins"
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRXCA50TH
Arabidopsis best BAC match: AC007296.2
Arabidopsis position: 1.0360000
Arabidopsis identities: 0.681
Best GenBank protein hit: AAA81878.1
Evalue: 1.2e-88
Identities: 0.990
Description: clp-like energy-dependent protease [Lycopersicon esculentum]
Comment: "ATP-dependent Clp protease s located in the stroma, and is involved in the degradation of abnormal soluble and membrane-bound proteins"
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1038 was used as an overgo probe on plate 16 [well H8]
Plausible BAC Matches: None
Overgo Sequences
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A sequence
CCGGAGCATCAAAATGGTAACGTC
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B sequence
CGTTCCAGCAATTGCAGACGTTAC
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AB sequence
CCGGAGCATCAAAATGGTAACGTCTGCAAT
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Marker sequence
GCTCTTCCTTCAGTTCTCAGTCACTGAACCCTCGCCGGAGCATCAAAATG
GTAACGTCTGCAATTGCTGGAACGTCAATTGTACCAGTCTCTTCCCGGCA CCAAACGTCTTTTTCGTCTCTGCTTTCCTCTAGAAGCTTAAGGAAAAATG TAGTTTCTGTTCTTCGAAGTCCATATTCTGATTCATCAGATATTGGATTT TCAAGCAAGAAGTTGGGGATCCCATTAAAGTTCAATGAGTACGAATCCGG TGCTCATACCAATTCAAGCTATGGTGTTATCGTAGCAAAAGAGGGGGCTA ATCCGCCCATCATGCCCGCCGTGATGACACCAGTGGGCGCGTTGGATCTT TCTACCGTGTTATTCAGGAATCGAATTATCTTCATTGGACAACCAGTCAA CTCTGCAGTTGCTCAGAAAGTAATATCACAACTTGTGACCCTTGCAACTA TAGATGAAAACGCAGATATTTTGATCTATCTTAACTGTCCTGGTGGAAGC ACATACTCTGTCTTGGCAATATATGACTGCATGTCATGGATAAAGCCTAA AGTTGGTACAGTATGTTTTGGAGCTGCTGCAAGCCAAGGAGCACTTCTTC TTGCTGGTGGAGAAAAGGGCATGAGGTATGCAATGCCAAATGCACGTATA ATGATTCATCAACCCTAAAATGGATGT |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1038
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| User comments |
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