SGN Marker TG479
SGN-M181
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
1800
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image |
|
Forward sequence
CTCAGCTAGTAGACTACGATTACGATGATTACGAATATGAAGAGTTTCAGAACCGGAGCTGCGTAATGGAGGAATCTGAGGGATCGGTTC
CTCGAAGGGGAGTGCAGTGGGTGATTATGGGTGATCCTATGGCACAGAGACACGTGTATGCCCAGTGGCTCTCGAAGCTTCTAGGTGTCC CTCATATTTCCATGGGTTCACTCGTTCGCCAAGAGCTCCACCCTCGTTCTTCTCTCTACAAGCAGGTTTTTGTTTATTCTGCATTTCTGT TTGTTTGAGCTTTCAATCTATCTGCAATGGAAATATGAAAATAAAGATTGTTCTTTTAGTTATTAGCTGGTCATATTTTTGACAAATTGT TAAAATAATTGAAAGAATTAACTTTGAATTGAGGGATTGAATTACAAAATTTACATATAATTGATCTATGCTAGCTCAGAATGAAAAGTT TATAAGCTTGATTGAGCTCAAACCT |
|
Reverse sequence
AAACATCACTTTTGAAACATATAGATATTTGCACAAACAAAGTAAAACTACGTGAGAAGACCAAGTGAGTACCAACAGTTCCACAACAAA
TGGCATAGATATATAAACAATTCAGTGTGGTTACGTCAACTAGCAATCAGGTACTCCGTATATTAGCTATCAAACAAAAGATCTTTGATT TGATTTTTCCTCAAACAAGATACTTGAAGGCCTAAAATGACATTTTGAAACAGCACATTTGCATGTTGAATTCAGCAAGCACTAGTATTT ACACACATCAAGAATGCTAAGGAGGGAATCTATAGTCCAATTCATTGAATGTTAAAAGAGGCAATCTACAATTTCATTCATCTCAAGTTA CAATATCAATTTTTTTAGAGTATCTGCAACTGTAAAATTTAAAGCATCATTAGGTACCTGCTCTGCATGCACATGCAGGTTCTTCCTCGA GACATCTTCCATGATACTTGAAGGCCTAAAATGACCACCCTCTGG |
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U170475 | 1.4e-07 | 80 (16.8% of RFLP seq) | + |
| SGN-U144676 | 4e-137 | 245 (51.6% of RFLP seq) | + |
| SGN-U144676 | 1.2e-32 | 80 (16.2% of RFLP seq) | - |
| SGN-U144673 | 1.3e-38 | 80 (16.2% of RFLP seq) | - |
 Mapped locations
|
Mapped locations
|  Tomato - Kazusa and SolCAP markers mapped to genome |
|  Eggplant-COSII |
|  Tomato-EXPEN 2000 |
|  Eggplant-LXM 2002 |
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
TG479 was used as an overgo probe on plate 1 [well A3]
TG479 was used as an overgo probe on plate 2 [well A8]
Plausible BAC Matches: None
Overgo Sequences
|
A sequence
TTTCAGAACCGGAGCTGCGTAATG
|
|
B sequence
ATCCCTCAGATTCCTCCATTACGC
|
|
AB sequence
TTTCAGAACCGGAGCTGCGTAATGGAGGAA
|
|
Marker sequence
CTCAGCTAGTAGACTACGATTACGATGATTACGAATATGAAGAGTTTCAG
AACCGGAGCTGCGTAATGGAGGAATCTGAGGGATCGGTTCCTCGAAGGGG AGTGCAGTGGGTGATTATGGGTGATCCTATGGCACAGAGACACGTGTATG CCCAGTGGCTCTCGAAGCTTCTAGGTGTCCCTCATATTTCCATGGGTTCA CTCGTTCGCCAAGAGCTCCACCCTCGTTCTTCTCTCTACAAGCAGGTTTT TGTTTATTCTGCATTTCTGTTTGTTTGAGCTTTCAATCTATCTGCAATGG AAATATGAAAATAAAGATTGTTCTTTTAGTTATTAGCTGGTCATATTTTT GACAAATTGTTAAAATAATTGAAAGAATTAACTTTGAATTGAGGGATTGA ATTACAAAATTTACATATAATTGATCTATGCTAGCTCAGAATGAAAAGTT TATAAGCTTGATTGAGCTCAAACCT |
TG479 was used as an overgo probe on plate 2 [well A8]
Plausible BAC Matches: P021D23, P162M04, P209L16, P092H05, P020P05
Overgo Sequences
|
A sequence
TTTCAGAACCGGAGCTGCGTAATG
|
|
B sequence
ATCCCTCAGATTCCTCCATTACGC
|
|
AB sequence
TTTCAGAACCGGAGCTGCGTAATGGAGGAA
|
|
Marker sequence
CTCAGCTAGTAGACTACGATTACGATGATTACGAATATGAAGAGTTTCAG
AACCGGAGCTGCGTAATGGAGGAATCTGAGGGATCGGTTCCTCGAAGGGG AGTGCAGTGGGTGATTATGGGTGATCCTATGGCACAGAGACACGTGTATG CCCAGTGGCTCTCGAAGCTTCTAGGTGTCCCTCATATTTCCATGGGTTCA CTCGTTCGCCAAGAGCTCCACCCTCGTTCTTCTCTCTACAAGCAGGTTTT TGTTTATTCTGCATTTCTGTTTGTTTGAGCTTTCAATCTATCTGCAATGG AAATATGAAAATAAAGATTGTTCTTTTAGTTATTAGCTGGTCATATTTTT GACAAATTGTTAAAATAATTGAAAGAATTAACTTTGAATTGAGGGATTGA ATTACAAAATTTACATATAATTGATCTATGCTAGCTCAGAATGAAAAGTT TATAAGCTTGATTGAGCTCAAACCT |
| Related Markers
|
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of TG479
|
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
