SGN Marker T1227
SGN-M1849
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 1.01.01
Tomato EST read: TPTAB70TH
Arabidopsis best BAC match: AB007646.1
Arabidopsis position: 5.2790000
Arabidopsis identities: 0.882
Best GenBank protein hit: BAB11037.1
Evalue: 1.5e-43
Identities: 0.656
Description: histidinol dehydrogenase [Arabidopsis thaliana]
Comment: Histidinol dehydrogenase (HDH) catalyzes two sequential oxidation reactions to produce histidine from histidinol via histidinaldehyde.
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAB70TH
Arabidopsis best BAC match: AB007646.1
Arabidopsis position: 5.2790000
Arabidopsis identities: 0.882
Best GenBank protein hit: BAB11037.1
Evalue: 1.5e-43
Identities: 0.656
Description: histidinol dehydrogenase [Arabidopsis thaliana]
Comment: Histidinol dehydrogenase (HDH) catalyzes two sequential oxidation reactions to produce histidine from histidinol via histidinaldehyde.
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1227 was used as an overgo probe on plate 11 [well B8]
Plausible BAC Matches: None
Overgo Sequences
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A sequence
CATTGAGTAGGTCCTGTAGCTTGG
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B sequence
GCCCGAAGATTACTAGCCAAGCTA
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AB sequence
CATTGAGTAGGTCCTGTAGCTTGGCTAGTA
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Marker sequence
GCCTCGTGCCGATCTTTCTCCGGCGACGACCTCTAATTAACATTGATGGA
CCTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTT CGGGCCAATTCCTACCACCGCCAATACCTGTATTTTATCGGAAATATTCT TATCTACCCTGCAGGGTTAATTCGTAAGTCAATTAGGTGCCTCAATGAAG TCGTATAAGTTATCGGAGCTTACCAACCTCTGAGGTTGACCAGCCTCAAG GCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACCAGTTCAACCCA TTGTTGATGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGATTACCAC CATCGCGGTTTGACCAAAGTTGTCCTGGATAAGATAGTTGAAGATGTCAG TGAGCCTTCCGATCCCGAGCTCGATTCATCTGTTCGAGAAGCATTTGATG TGGCATATAACACCATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAG AAAGTTGTTGAGAACCATCATGGGGTCAGATGTAAACGTGTCGCTAGGAG CATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTT CTACAGCTCTGATGCTTTCAGTTCCAGCACAAATTGCTGGATGT |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1227
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| User comments |
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