SGN Marker T1438
SGN-M2003
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 98
Tomato EST read: TPTAT53TH
Arabidopsis best BAC match: AL022603.1
Arabidopsis position: 4.1110000
Arabidopsis identities: 0.731
Best GenBank protein hit: CAB81259.1
Evalue: 1.5e-57
Identities: 0.529
Description: putative protein [Arabidopsis thaliana]
Comment: 4.00 e-47gb|AAA85261.1| (U13152) guanine nucleotide-binding protein beta 5 [Mesocricetus
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAT53TH
Arabidopsis best BAC match: AL022603.1
Arabidopsis position: 4.1110000
Arabidopsis identities: 0.731
Best GenBank protein hit: CAB81259.1
Evalue: 1.5e-57
Identities: 0.529
Description: putative protein [Arabidopsis thaliana]
Comment: 4.00 e-47gb|AAA85261.1| (U13152) guanine nucleotide-binding protein beta 5 [Mesocricetus
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1438 was used as an overgo probe on plate 11 [well D6]
Plausible BAC Matches: P264N14, P116F12, P329G05, P047B24
Overgo Sequences
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A sequence
AGGGTGTCAAATGGTCTCCTGATG
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B sequence
GTGAGGAAACCAGAACCATCAGGA
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AB sequence
AGGGTGTCAAATGGTCTCCTGATGGTTCTG
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Marker sequence
GCGGTTATTCACTATGATGTTCCGCCGTATCTAACCTATCATTTCTTCAA
TCAGTTCAGGACGCCTTCAAACCCTAATAATTTCTTAAAGGGTGTCAAAT GGTCTCCTGATGGTTCTGGTTTCCTCACTTGCTCTGATGATAATACCTTT TGTTTATATAACTTGCCATATGATGAAAGTGGACAGCTTGCTGATTTTTC CTCATCAGCTGCTGATACAGATTCGTATGCTGCAAGTCTTGTCATGAGTG ACGGGGAGTCTGTATATGACTATTGCTGGTATCCCTATATGTCTTCTTCA AGTCCAGAGACGTGTGTTTTTGCAAGTACTACCCGTGATCACCCTATTCA TCTCTGGGATGCTACTACTGGACAGTTACGCTGTACATACCGTGCTTATG ATGCCATGGACGAGATCACTGCTGCCTTTTCGATTGCCTTCAATCCCGCA GGGACTAAGATATTTGCTGGTTACAACAAATCCATAAGAATATTTGATAT TCATCGGCCTGGCAGAGATTTTACCCAGCACTCCACCCTTCAAGGAAATA AAGAAGGGCAATCAGGCATTATATCCTCAATGGCTTTCTGTCCAAGCCAT TCAAGGTTACTGGCAACTGGCTCCTATAGCCAAACTACTGCCATACATAG GGAAGATAACATGGAACTTCTCTATG |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1438
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| User comments |
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