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SGN Marker CT128

SGN-M455

Synonyms

None

Locus associations

None

RFLP details

Insert size

700

Vector

pBLUESC

Cutting Site

EcoR1

Drug Resistance

AMP

Image

CT128 RFLP image

Forward sequence

CTTTTTTTTTTTTTCAACACAAACAAAATTTCATTATATTGTCAGGTAGCACACTACATCTTTACACTGTCATCAAACGACCAGAGACTT
GAGAACGTTTTAAGAGATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAGGCATTGTTGTTTACGGGGTCTGCAAGGTGGTCAGC
AAGGTTCTCCAATGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTC
CTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTC
ACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATG
GACCAAGCTTGGGTTGCCCAAGTAGTCAA

Reverse sequence

CTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGAT
GGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCG
GATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCC
AAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGC
TTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCT
ATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCA

RFLP sequence matches to unigenes

Unigene	e value	Match length (bp)	Strand
SGN-U160769	3.4e-05	32 (6.7% of RFLP seq)	+
SGN-U143785	3.4e-05	32 (6.7% of RFLP seq)	+
SGN-U163800	8.5e-06	45 (9.4% of RFLP seq)	+
SGN-U155601	1.4e-07	36 (7.5% of RFLP seq)	+
SGN-U160737	3.5e-08	33 (6.9% of RFLP seq)	+
SGN-U143741	3.5e-08	33 (6.9% of RFLP seq)	+
SGN-U143740	3.5e-08	33 (6.9% of RFLP seq)	+
SGN-U155521	2.5e-18	58 (12.1% of RFLP seq)	+
SGN-U163749	1.6e-19	60 (12.5% of RFLP seq)	+
SGN-U143467	6.6e-22	80 (16.7% of RFLP seq)	+
SGN-U160559	6.6e-22	80 (16.7% of RFLP seq)	+
SGN-U160560	1.1e-23	91 (19.0% of RFLP seq)	+
SGN-U160471	1.7e-25	130 (27.1% of RFLP seq)	+
SGN-U143468	4.4e-26	91 (19.0% of RFLP seq)	+
SGN-U143334	2.8e-27	217 (45.3% of RFLP seq)	+
SGN-U163803	1.9e-31	96 (20.0% of RFLP seq)	+
SGN-U163763	1.9e-31	80 (16.7% of RFLP seq)	+
SGN-U163747	4.7e-32	105 (21.9% of RFLP seq)	+
SGN-U155601	4.7e-32	105 (21.9% of RFLP seq)	+
SGN-U163803	8.2e-40	102 (21.3% of RFLP seq)	+
SGN-U143335	5.3e-41	208 (43.4% of RFLP seq)	+
SGN-U163807	1.3e-41	117 (24.4% of RFLP seq)	+
SGN-U163805	8.6e-43	107 (22.3% of RFLP seq)	+
SGN-U163747	8.6e-43	106 (22.1% of RFLP seq)	+
SGN-U143333	2.2e-43	220 (45.9% of RFLP seq)	+
SGN-U163760	3.5e-45	115 (24.0% of RFLP seq)	+
SGN-U155601	1.4e-47	183 (38.2% of RFLP seq)	+
SGN-U163761	2.8e-64	146 (30.5% of RFLP seq)	+
SGN-U163749	1.4e-84	181 (37.8% of RFLP seq)	+
SGN-U163755	1.5e-87	230 (48.0% of RFLP seq)	+
SGN-U163751	5e-103	364 (76.0% of RFLP seq)	+
SGN-U163804	2e-105	284 (59.3% of RFLP seq)	+
SGN-U163801	3e-107	275 (57.4% of RFLP seq)	+
SGN-U155602	2e-136	372 (77.7% of RFLP seq)	+
SGN-U155597	1e-140	367 (76.6% of RFLP seq)	+
SGN-U155522	5e-146	372 (77.7% of RFLP seq)	+
SGN-U163802	2e-151	373 (77.9% of RFLP seq)	+
SGN-U155520	6e-161	373 (77.9% of RFLP seq)	+
SGN-U163746	1e-162	300 (62.6% of RFLP seq)	+
SGN-U155529	4e-168	381 (79.5% of RFLP seq)	+
SGN-U155519	2e-170	425 (88.7% of RFLP seq)	+
SGN-U155604	1e-174	372 (77.7% of RFLP seq)	+
SGN-U155518	3e-175	373 (77.9% of RFLP seq)	+
SGN-U155603	3e-175	389 (81.2% of RFLP seq)	+
SGN-U155599	7e-176	382 (79.7% of RFLP seq)	+
SGN-U163753		447 (93.3% of RFLP seq)	+
SGN-U155600		464 (96.9% of RFLP seq)	+
SGN-U143785	3.5e-05	32 (6.5% of RFLP seq)	-
SGN-U160769	3.5e-05	32 (6.5% of RFLP seq)	-
SGN-U155601	1.4e-07	36 (7.3% of RFLP seq)	-
SGN-U160471	3.6e-08	45 (9.1% of RFLP seq)	-
SGN-U143741	3.6e-08	33 (6.7% of RFLP seq)	-
SGN-U143740	3.6e-08	33 (6.7% of RFLP seq)	-
SGN-U160737	3.6e-08	33 (6.7% of RFLP seq)	-
SGN-U163763	1.5e-10	49 (9.9% of RFLP seq)	-
SGN-U143468	9.5e-12	59 (11.9% of RFLP seq)	-
SGN-U160559	2.4e-12	80 (16.2% of RFLP seq)	-
SGN-U143467	3.9e-14	83 (16.8% of RFLP seq)	-
SGN-U143333	2.5e-15	113 (22.8% of RFLP seq)	-
SGN-U155601	1.6e-16	103 (20.8% of RFLP seq)	-
SGN-U143334	1.7e-19	132 (26.7% of RFLP seq)	-
SGN-U160559	6.8e-22	80 (16.2% of RFLP seq)	-
SGN-U143467	6.8e-22	80 (16.2% of RFLP seq)	-
SGN-U160560	1.1e-23	91 (18.4% of RFLP seq)	-
SGN-U143334	1.1e-23	275 (55.6% of RFLP seq)	-
SGN-U143335	1.1e-23	123 (24.8% of RFLP seq)	-
SGN-U143336	1.1e-23	275 (55.6% of RFLP seq)	-
SGN-U143468	4.5e-26	91 (18.4% of RFLP seq)	-
SGN-U143333	4.5e-26	135 (27.3% of RFLP seq)	-
SGN-U155601	1.9e-28	91 (18.4% of RFLP seq)	-
SGN-U155601	3e-30	106 (21.4% of RFLP seq)	-
SGN-U163763	3.2e-36	96 (19.4% of RFLP seq)	-
SGN-U163747	8.9e-43	106 (21.4% of RFLP seq)	-
SGN-U163750	2.2e-43	220 (44.4% of RFLP seq)	-
SGN-U163755	1.5e-50	144 (29.1% of RFLP seq)	-
SGN-U163761	4.4e-60	147 (29.7% of RFLP seq)	-
SGN-U163760	4.9e-69	255 (51.5% of RFLP seq)	-
SGN-U163804	8.6e-77	176 (35.6% of RFLP seq)	-
SGN-U163747	8.6e-77	312 (63.0% of RFLP seq)	-
SGN-U155521	5.5e-78	266 (53.7% of RFLP seq)	-
SGN-U163805	3.5e-79	192 (38.8% of RFLP seq)	-
SGN-U163746	3.6e-82	153 (30.9% of RFLP seq)	-
SGN-U163761	6.1e-87	221 (44.6% of RFLP seq)	-
SGN-U163751	1.7e-93	364 (73.5% of RFLP seq)	-
SGN-U163802	2e-133	339 (68.5% of RFLP seq)	-
SGN-U163803	1e-134	309 (62.4% of RFLP seq)	-
SGN-U163801	5e-146	484 (97.8% of RFLP seq)	-
SGN-U163753	9e-151	276 (55.8% of RFLP seq)	-
SGN-U155602	2e-151	493 (99.6% of RFLP seq)	-
SGN-U155597	9e-157	494 (99.8% of RFLP seq)	-
SGN-U155604	3e-163	377 (76.2% of RFLP seq)	-
SGN-U155522	2e-176	495 (100.0% of RFLP seq)	-
SGN-U163749	5e-180	389 (78.6% of RFLP seq)	-
SGN-U155529		445 (89.9% of RFLP seq)	-
SGN-U155599		401 (81.0% of RFLP seq)	-
SGN-U155520		495 (100.0% of RFLP seq)	-
SGN-U155518		495 (100.0% of RFLP seq)	-
SGN-U155519		480 (97.0% of RFLP seq)	-
SGN-U155600		467 (94.3% of RFLP seq)	-
SGN-U155603		495 (100.0% of RFLP seq)	-

Mapped locations

Map: Tomato QTL map
Map version 137 (location: 53760)
Chromosome 2
Position 32.30 cM
Confidence uncalculated
Protocol RFLP

Tomato QTL map

Map: Pepper-COSII
Map version 58 (location: 41573)
Chromosome 2
Position 59.40 cM
Confidence F(LOD3)
Protocol RFLP

Pepper-COSII

Map: Pepper-FAO3
Map version 31 (location: 9208)
Chromosome 2
Position 76.74 cM
Confidence uncalculated
Protocol RFLP

Pepper-FAO3

Map: Tomato-EXPEN 1992
Map version 28 (location: 9207)
Chromosome 2
Position 44.80 cM
Confidence I(LOD2)
Protocol RFLP
Subscript A

Tomato-EXPEN 1992

Overgo hybridization and physical mapping

CT128 was used as an overgo probe on plate 15 [well G10]

Plausible BAC Matches: None

Overgo Sequences

Marker Submitted By

Name: Molly Jahn
Organization: Cornell University

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of CT128

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D455 marker 455

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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