SGN Marker CT130
SGN-M472
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
900
|
Vector
pBLUESC
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Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
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Forward sequence
CAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTC
GGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGAGATTTTGGATTTGATCCAC TTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTCCCGGAA TCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCC AGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAG ATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTT |
|
Reverse sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAAAGCCCCTTCCCTTAAAAATCT
TTTAATACCTGGGAAAATTTTACAAGGGGTTTTTGGCTAATATACTATATGAAAAAAAATCCCATTTAATTAGGGAAAATGCCTTTAGGG AAAAAAACCCCCCCCATGTTTTTGTGCCCTGGGCCACCCAAAGGAATTCCCAAATTCCCCAAGGGGCCCGTTCCCGGAAATGCTGATTGT TGTACCCAAAATCCCCCAAATGCCAACAATGCAAAACAACCCTTCTTGATTTCCTTGACTTTGAGTTCTTCAAATTTAACAGGGGCTTTA AAAAACCCCAATGGGGCAAAACCCCCCCCAGGGGACTTCTTCTTTTCTGAATCTTTTTCCCAACCCCTTTGGGGTTCCACAAAAGCTTTG GCTAAAAATTCCATACCCCAA |
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U143634 | 1.7e-22 | 97 (20.0% of RFLP seq) | + |
| SGN-U143632 | 485 (100.0% of RFLP seq) | + | |
| SGN-U143633 | 482 (99.4% of RFLP seq) | + | |
| SGN-U143633 | 9.1e-49 | 197 (41.8% of RFLP seq) | - |
| SGN-U143632 | 4.5e-66 | 386 (82.0% of RFLP seq) | - |
| SGN-U143634 | 1e-100 | 404 (85.8% of RFLP seq) | - |
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 2000 |
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
CT130 was used as an overgo probe on plate 5 [well B7]
Plausible BAC Matches: P282A16, P043C17, P257N09, P239D11, P141A12, P117A21, P215N15, P142D04, P261K13, P072D12, P111I14, P081A17
Overgo Sequences
|
A sequence
AACTCCATGTCTCGGTTCTCCATG
|
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B sequence
GCATCCAATCAGCTGACATGGAGA
|
|
AB sequence
AACTCCATGTCTCGGTTCTCCATGTCAGCT
|
|
Marker sequence
CAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCC
GCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCAT GTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCT CAGCCCCCGGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCT GCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGC TATGCTTGCTGTTCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTA ATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACA TATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTAT TGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAG ATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTT |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of CT130
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| User comments |
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