Sol Genomics Network

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SGN Marker CT149

SGN-M529

Synonyms

None

Locus associations

None

RFLP details

Insert size

1100

Vector

pBLUESC

Cutting Site

EcoR1

Drug Resistance

AMP

Image

CT149 image not available

Forward sequence

CTTTTTTTTTTTTTTTTTGAGCAAAGAGAATAATACTTGTTCTGATTATAGGACTAACCATTAATCCAAAATAAAAAGCTTTACAAAAGC
TATTCAATAATTCCATCATTAGAGTCTTTTTTTTCACAAACACAATATATTTAACATAAAACTAAACTTATTCATCGATCTCTTTCCCCT
TAAATACAATAAACCCCTCCATCCATACTTAATCCCCAGACCTAAAATATAAAATAAGAAGAAGAAATTATTCGCATTTTTTTCTCAAAT
TTCAGACCTTTTGCTCATCACTATATATATATATATATATTATAACAACGATTATAAGTTTTTCTGACGAAGAGAAAAAATTATGGGTTT
TCCGGTGGGATATACGGATTTATTCCTACCCAAATTGTTAGTACACTTACTAACGGTTCTCGGATTCGTCAGAAAGTTCATTTGCACGAT
TTTCACTGTTTTTGGTTTAGGAGATTTTCTCGAACCG

Reverse sequence

GGAATTCCTTTTTTTTTTTTTTTTTTTAAAAATTAAAACTATTTATCTTCATTCCATATTCTCAAAATTGTAGACACTATACAATAACTT
TTTCCTCCATAATTATTTTTCCCCCTCTTTTTTTTATCTTATAGTATATATACATTTTTAAACTATAAAAAAAAATTGCTACAAACCGGC
GGCGACCGGAGAATACTCGCCGTAAAAATCAGAAATGCCGGAAGCCAACCATAATCTCTCATTAAAGCTCTCTTGCATATCGTCCGGAAT
AAATGGCGTCCGGCAAAGTGGACACGTTTTCTGATCATGATCCATCCAACGATCCAAACAACTCCGGTGAAAAATATGCCGGCAATTCGT
CAACCGTCGGATCTCATCCTCTCCGTCAAACTCATACAAACAAACTGCACAACTCTCCGGCGGGTCAACCAGCTCAGAGAACTTCACCAC
CGGAAGTAGCTCCCGGATCAACGCCGCCGACACTGAATGAAGCTCCGAGTGTGAT

RFLP sequence matches to unigenes

Unigene	e value	Match length (bp)	Strand
SGN-U143446	1.1e-63	143 (29.4% of RFLP seq)	+
SGN-U143449	4.8e-69	156 (32.0% of RFLP seq)	+
SGN-U159485	1e-91	177 (36.3% of RFLP seq)	+
SGN-U143447	5e-112	252 (51.7% of RFLP seq)	+
SGN-U159485		380 (75.2% of RFLP seq)	-

Mapped locations

Map: Sun1642 x LA1589
Map version 85 (location: 43635)
Chromosome 1
Position 49.40 cM
Confidence uncalculated
Protocol RFLP

Sun1642 x LA1589

Map: Yellow Stuffer x LA1589
Map version 83 (location: 43497)
Chromosome 1
Position 34.20 cM
Confidence uncalculated
Protocol RFLP

Yellow Stuffer x LA1589

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589
Map version 79 (location: 43035)
Chromosome 1
Position 53.70 cM
Confidence uncalculated
Protocol RFLP

Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

Map: Tomato-EXPIMP 2008
Map version 55 (location: 40739)
Chromosome 1
Position 66.00 cM
Confidence uncalculated
Protocol RFLP

Tomato-EXPIMP 2008

Map: Tomato-EXHIR 1997
Map version 32 (location: 9397)
Chromosome 8
Position 69.60 cM
Confidence I(LOD2)
Protocol RFLP

Tomato-EXHIR 1997

Map: Tomato-EXPEN 1992
Map version 28 (location: 9398)
Chromosome 1
Position 31.00 cM
Confidence I
Protocol RFLP

Tomato-EXPEN 1992

Map: Tomato-EXPIMP 2001
Map version 26 (location: 9399)
Chromosome 1
Position 72.00 cM
Confidence F(LOD3)
Protocol RFLP

Tomato-EXPIMP 2001

Overgo hybridization and physical mapping

CT149 was used as an overgo probe on plate 15 [well D2]

Plausible BAC Matches: None

Overgo Sequences

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of CT149

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D529 marker 529

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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