SGN Marker TG57

SGN-M61

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
2900
Vector
pUC
Cutting Site
PST1
Drug Resistance
AMP
Image
TG57 RFLP image
Forward sequence
TTCTTGAGGTGCTTCCTGAAGATGGTAAGAAGTTCTGATATGTTTTATCTTCTATTCGAATGATACATCCTTATTCCTTCTCCAGTTATA
ATTTTTTTACTTTTTGCTCTGTAGGATCATGCCTCCAAAAGTCATTGAGTGATTTGCATGTAGGAGTTAAAAATCTTATACAAACAATAA
ATGAACTTCATTTGAAGCATCGATCCCTGGCTGGTGCATTGCAGAATCATAGAGATACCGATGCTAAGAATAAAGCCGAGCTTAAGTGTT
TAAGAGGTAACTCCTTATTCTTGATTCAAGTTAATGGAAATATTTTGAAATCTTATTATTGTGGAAATAAATTATATGTTTATGCCATGT
AAACATGGACCCCACAAGTAAATAAGTTAAAGAAAATTATTAAAGAGTTTCTACAGGCAAACTTAAGTAGTGAAAACAAATTCCATGATA
TTACTGTATAATATTATGAAAATCTTTGTGTTAGTGAAACAAATATTGTGGTATTAAT
Reverse sequence
AATACACATTTTAAGGGGGGAAAACAGTGACCAACAACAACTGCTCTTCAATATACCAGGTTCTCTTGATGCTTCTTCCAGCTTGCCCTC
AATCATATTTCTTTCTTGCATGTGTTTCTGCATCTCCTTTTCTAACCAGGCTATTCTGGAATCAGCAATGGTGGAAGATCGCCGAAAAAC
ATCAGTTATATCATTCTTCAAATTCATTTCTTTTTCCCTCCACGAAAGATTGTCTTTCTCCACCTAGTTTAATCACGAAAATTAGCAACA
GATAAACAAAATAAAATTGAACTACCAACTAGCTACAACCTGTAGTTTCTCGTATAAGGACTGATAAAGAGATAGATCCTCTTTAGCTTT
CGCAAGTTGATCTTTAACCAAGATATATGGTTGGGAAGAGCATATGGCTTTCAGATTCTTTAGTTTGTTCTGTCAAGGAAACATCCATTC
AAATCACTAGTGAAGAAGAAAGCAAATGAGGTTCTACATAGTATAACAGCCAGAACACT
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1500094.9e-66126 (24.8% of RFLP seq)-
SGN-U1500092e-105192 (37.7% of RFLP seq)-
Mapped locations  
Map: Potato meta-QTL consensus map   
Map version
107 (location: 53358)
Chromosome
11
Position
23.33 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Late_blight_11 MQTL_1_Maturity_11 MQTL_2_Late_blight_11 MQTL_2_Maturity_11
Potato meta-QTL consensus map

Map: Pepper-AC99   
Map version
34 (location: 7912)
Chromosome
4
Position
33.94 cM
Confidence
uncalculated
Protocol
RFLP


Pepper-AC99

Map: Tomato-EXPEN 1992   
Map version
28 (location: 7911)
Chromosome
11
Position
47.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 1992

Map: Potato-TXB 1992   
Map version
27 (location: 7910)
Chromosome
11
Position
8.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Potato-TXB 1992

Map: Tomato-EXPIMP 2001   
Map version
26 (location: 7913)
Chromosome
11
Position
76.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPIMP 2001
Overgo hybridization and physical mapping 
TG57 was used as an overgo probe on plate 10 [well G1]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

P017I06,   P187O08,   P105C18,   P326P15,   P130N01,   P249M24,   P177I15,   P259D02,   P042M08,   P139A12,   P331D01,   P145N06,   P214J17,   P251A05,   P099E10,   P160P15,   P290F16,   P234K17,   P144A02,   P310I17,   P209L15,   P251E07,   P205J11,   P061K23,   P293I22,   P146A07,   P125K12,   P144P24,   P241D11,   P127L04,   P170G21,   P129H24,   P001M11,   P169M14,   P316I03,   P312K14,   P123M20,   P214B08,   P027E16,   P003A17,   P293A21,   P158H09,   P046L24,   P141G19,   P073M11,   P223C15,   P336K11

 Overgo Sequences

A sequence
CTTTTTGCTCTGTAGGATCATGCC
B sequence
CTCAATGACTTTTGGAGGCATGAT
AB sequence
CTTTTTGCTCTGTAGGATCATGCCTCCAAA
Marker sequence
TTCTTGAGGTGCTTCCTGAAGATGGTAAGAAGTTCTGATATGTTTTATCT
TCTATTCGAATGATACATCCTTATTCCTTCTCCAGTTATAATTTTTTTAC
TTTTTGCTCTGTAGGATCATGCCTCCAAAAGTCATTGAGTGATTTGCATG
TAGGAGTTAAAAATCTTATACAAACAATAAATGAACTTCATTTGAAGCAT
CGATCCCTGGCTGGTGCATTGCAGAATCATAGAGATACCGATGCTAAGAA
TAAAGCCGAGCTTAAGTGTTTAAGAGGTAACTCCTTATTCTTGATTCAAG
TTAATGGAAATATTTTGAAATCTTATTATTGTGGAAATAAATTATATGTT
TATGCCATGTAAACATGGACCCCACAAGTAAATAAGTTAAAGAAAATTAT
TAAAGAGTTTCTACAGGCAAACTTAAGTAGTGAAAACAAATTCCATGATA
TTACTGTATAATATTATGAAAATCTTTGTGTTAGTGAAACAAATATTGTG
GTATTAAT
Marker Submitted By 
Name: Molly Jahn
Organization: Cornell University
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG57  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D61 marker 61
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