SGN Marker SSR11
SGN-M684
| Synonyms |
| Locus associations |
| SSR info |
Annealing temperatures: Low: 50 High: 50
Repeat motif: CAG Repeat number: 6
Repeat motif: Repeat number:
Forward primer: CCTTCAATTGACCTCCCTCA
Reverse primer: GCATCTGGAAATTAGAGGCG
Predicted size: 235
| Derivations |
This marker was derived from EST read SGN-E120237
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Other PCR data |
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| Overgo hybridization and physical mapping |
SSR11 was used as an overgo probe on plate 2 [well C3]
Plausible BAC Matches: P107I20, P046M03, P295I12, P159D05
Overgo Sequences
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A sequence
GCACAATCGCCTTCAATTGACCTC
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B sequence
CTAACGGGATTTGAGGGAGGTCAA
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AB sequence
GCACAATCGCCTTCAATTGACCTCCCTCAA
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Marker sequence
GCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGAGCTGAATTCC
GTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAA TGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCT ATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGAC GACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATT CAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAA TCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACA AATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGC AGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAAT CTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCA GCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGC AAATGCAACAGCAGC |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of SSR11
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| User comments |
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