Sol Genomics Network

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Solanum lycopersicum mRNA Solyc01g095080.2.1

mRNA details

Name

Solyc01g095080.2.1

Type

mRNA

Length

1,866

Organism

Solanum lycopersicum

Description

1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** O65209_NICGU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site

Location(s)

SL2.50ch01:86453267..86456196

Ontology term(s)

GFF source

ITAG_eugene

From BOGAS: 1

Interpro2go term

GO:0009058
GO:0030170

Length: 2930

Nb exon: 4

Sifter term

GO:0042803
GO:0016847

mRNA sequence

spliced mRNA sequence, including UTRs

>Solyc01g095080.2.1 1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** O65209_NICGU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site
TTCCTTAATTCTCTTACACCATAACACAACTACAACAAACACATAATACTTTTAATACAATTAGTTATTTATTAGAAGTA
TTTAAAGTAAAGCACTTGTGAGTTGTGTACATTTTATTAATCTTCATCTTCTTAATTCTCTTCAGTTTTTAATTTCTTCA
CTTCTAAACTCATTTAGTAAAAAAAAATGGGATTTGAGATTGCAAAGACCAACTCAATCTTATCAAAATTGGCTACTAAT
GAAGAGCATGGCGAAAACTCGCCATATTTTGATGGGTGGAAAGCATACGATAGTGATCCTTTCCACCCTCTAAAAAACCC
CAACGGAGTTATCCAAATGGGTCTTGCTGAAAATCAGCTTTGTTTAGACTTGATAGAAGATTGGATTAAGAGAAACCCAA
AAGGTTCAATTTGTTCTGAAGGAATCAAATCATTCAAGGCCATTGCCAACTTTCAAGATTATCATGGCTTGCCTGAATTC
AGAAAAGCGATTGCGAAATTTATGGAGAAAACAAGAGGAGGAAGAGTTAGATTTGATCCAGAAAGAGTTGTTATGGCTGG
TGGTGCCACTGGAGCTAATGAGACAATTATATTTTGTTTGGCTGATCCTGGCGATGCATTTTTAGTACCTTCACCATACT
ACCCAGCATTTAACAGAGATTTAAGATGGAGAACTGGAGTACAACTTATTCCAATTCACTGTGAGAGCTCCAATAATTTC
AAAATTACTTCAAAAGCAGTAAAAGAAGCATATGAAAATGCACAAAAATCAAACATCAAAGTAAAAGGTTTGATTTTGAC
CAATCCATCAAATCCATTGGGCACCACTTTGGACAAAGACACACTGAAAAGTGTCTTGAGTTTCACCAACCAACACAACA
TCCACCTTGTTTGTGACGAAATCTACGCAGCCACTGTCTTTGACACGCCTCAATTCGTCAGTATAGCTGAAATCCTCGAT
GAACAGGAAATGACTTACTGCAACAAAGATTTAGTTCACATCGTCTACAGTCTTTCAAAAGACATGGGGTTACCAGGATT
TAGAGTCGGAATCATATATTCTTTTAACGACGATGTCGTTAATTGTGCTAGAAAAATGTCGAGTTTCGGTTTAGTATCTA
CACAAACGCAATATTTTTTAGCGGCAATGCTATCGGACGAAAAATTCGTCGATAATTTTCTAAGAGAAAGCGCGATGAGG
TTAGGTAAAAGGCACAAACATTTTACTAATGGACTTGAAGTAGTGGGAATTAAATGCTTGAAAAATAATGCGGGGCTTTT
TTGTTGGATGGATTTGCGTCCACTTTTAAGGGAATCGACTTTCGATAGCGAAATGTCGTTATGGAGAGTTATTATAAACG
ATGTTAAGCTTAACGTCTCGCCTGGATCTTCGTTTGAATGTCAAGAGCCAGGGTGGTTCCGAGTTTGTTTTGCAAATATG
GATGATGGAACGGTTGATATTGCGCTCGCGAGGATTCGGAGGTTCGTAGGTGTTGAGAAAAGTGGAGATAAATCGAGTTC
GATGGAAAAGAAGCAACAATGGAAGAAGAATAATTTGAGACTTAGTTTTTCGAAAAGAATGTATGATGAAAGTGTTTTGT
CACCACTTTCGTCACCTATTCCTCCCTCACCATTAGTTCGTTAAGACTTAATTAAAAGGGAAGAATTTAATTTATGTTTT
TTTATATTTTGAAAAAAATTTGTAAGAATAAGATTATAATAGGAAAAGAAAATAAGTATGTAGGATGAGGAGTATTTTCA
GAAATAGTTGTTAGCGTATGTATTGACAACTGGTCTATGTACTTAGACATCATAATTTGTCTTAGCTAATTAATGAATGC
AAAAGTGAAGTTATGTTATGACTCTT

Download sequence (1.9Kb)

Genomic sequence(s)

unprocessed genomic sequence underlying each location of this mRNA

>Solyc01g095080.2.1 SL2.50ch01:86456196..86453267 (sequence from reverse strand)
TTCCTTAATTCTCTTACACCATAACACAACTACAACAAACACATAATACTTTTAATACAATTAGTTATTTATTAGAAGTA
TTTAAAGTAAAGCACTTGTGAGTTGTGTACATTTTATTAATCTTCATCTTCTTAATTCTCTTCAGTTTTTAATTTCTTCA
CTTCTAAACTCATTTAGTAAAAAAAAATGGGATTTGAGATTGCAAAGACCAACTCAATCTTATCAAAATTGGCTACTAAT
GAAGAGCATGGCGAAAACTCGCCATATTTTGATGGGTGGAAAGCATACGATAGTGATCCTTTCCACCCTCTAAAAAACCC
CAACGGAGTTATCCAAATGGGTCTTGCTGAAAATCAGGTAATTAATTATCCTTTATTTATATATTTTGCAGTTTGACCAA
ACAGACTATTATAATTTTTTTCTGAAACCTCGATGGTGTTAAATTTCTTTTGTAGCTTTGTTTAGACTTGATAGAAGATT
GGATTAAGAGAAACCCAAAAGGTTCAATTTGTTCTGAAGGAATCAAATCATTCAAGGCCATTGCCAACTTTCAAGATTAT
CATGGCTTGCCTGAATTCAGAAAAGTACATATCGTACTATAGTCAGTTAAATTATATTGATAGTATAAAAATTCGTTAAT
ATATTTAACTAACGAGTTTATTTAATCAGGCGATTGCGAAATTTATGGAGAAAACAAGAGGAGGAAGAGTTAGATTTGAT
CCAGAAAGAGTTGTTATGGCTGGTGGTGCCACTGGAGCTAATGAGACAATTATATTTTGTTTGGCTGATCCTGGCGATGC
ATTTTTAGTACCTTCACCATACTACCCAGCGTAAGTATATTTAATTATATATGTGTAAAAAAAATTAAAATCATCAAATC
ATTTTTTTTATTTGTATTACCAAATAAATTGTCTAATTTTCAAGATTGTAACACATTCATCAAAGTACCTAATAATATAA
ACGATTCAGTATATTAACGATGTATATAATTTAATTCCTTTGGCGGATTTGTCTTTTTATGTTGGGCCATCAGAAGAACA
TTCTGGTGTATTAATTAATTAATTAATTAATAATAGATGTGTTGTCATTCTTTTTTAAGACAGCGAGAGTTTAATTAGTC
TTAATTACTGGATTATCACGCAAGCTCTTTCTTGAATTTTATTATTCTTATATTAAACACATGATAGCATAATATCTTTC
TTTTGTGGAATCCAGCTTGTTCGTGAAGCTTTGTATTCACACTTATAAAACAACAAAAAATAAAATCTGGTGGTAATTGA
TTAAAGAGAGAAATATAAAAAAATAATAGTCAAATAGACTAATAAGGAAAGAAATAAAAAATACACAAAATACTAAAAAA
AAAGAATTAAGGTATAGTGGTCTATTATTGAGAACTTTTTTGAAGAATTGAACCCCACTTTAATTTCTTGCTTGACCCGT
GACCATTGCTTATCGAGGTAAAATAAAATTTCAAACATTGACTATGACTTGTTAGAGAGTAATTACCACAAGTCAAAATT
TTGTTACTCTGTCTCGTTATTTCATTAGGATCGATAAGATAACATCTAACATATATATCTTTTTTATTAGTACTTGTTTA
TTTTTAGTAAAAGCACGTTATACATTTTACAATAGTCAATTGTTGCATATATTAGTATATATATTTTGCTAAGTCCTAAC
TAACAATATTTTTGGCAATTGACTAATGCAGATTTAACAGAGATTTAAGATGGAGAACTGGAGTACAACTTATTCCAATT
CACTGTGAGAGCTCCAATAATTTCAAAATTACTTCAAAAGCAGTAAAAGAAGCATATGAAAATGCACAAAAATCAAACAT
CAAAGTAAAAGGTTTGATTTTGACCAATCCATCAAATCCATTGGGCACCACTTTGGACAAAGACACACTGAAAAGTGTCT
TGAGTTTCACCAACCAACACAACATCCACCTTGTTTGTGACGAAATCTACGCAGCCACTGTCTTTGACACGCCTCAATTC
GTCAGTATAGCTGAAATCCTCGATGAACAGGAAATGACTTACTGCAACAAAGATTTAGTTCACATCGTCTACAGTCTTTC
AAAAGACATGGGGTTACCAGGATTTAGAGTCGGAATCATATATTCTTTTAACGACGATGTCGTTAATTGTGCTAGAAAAA
TGTCGAGTTTCGGTTTAGTATCTACACAAACGCAATATTTTTTAGCGGCAATGCTATCGGACGAAAAATTCGTCGATAAT
TTTCTAAGAGAAAGCGCGATGAGGTTAGGTAAAAGGCACAAACATTTTACTAATGGACTTGAAGTAGTGGGAATTAAATG
CTTGAAAAATAATGCGGGGCTTTTTTGTTGGATGGATTTGCGTCCACTTTTAAGGGAATCGACTTTCGATAGCGAAATGT
CGTTATGGAGAGTTATTATAAACGATGTTAAGCTTAACGTCTCGCCTGGATCTTCGTTTGAATGTCAAGAGCCAGGGTGG
TTCCGAGTTTGTTTTGCAAATATGGATGATGGAACGGTTGATATTGCGCTCGCGAGGATTCGGAGGTTCGTAGGTGTTGA
GAAAAGTGGAGATAAATCGAGTTCGATGGAAAAGAAGCAACAATGGAAGAAGAATAATTTGAGACTTAGTTTTTCGAAAA
GAATGTATGATGAAAGTGTTTTGTCACCACTTTCGTCACCTATTCCTCCCTCACCATTAGTTCGTTAAGACTTAATTAAA
AGGGAAGAATTTAATTTATGTTTTTTTATATTTTGAAAAAAATTTGTAAGAATAAGATTATAATAGGAAAAGAAAATAAG
TATGTAGGATGAGGAGTATTTTCAGAAATAGTTGTTAGCGTATGTATTGACAACTGGTCTATGTACTTAGACATCATAAT
TTGTCTTAGCTAATTAATGAATGCAAAAGTGAAGTTATGTTATGACTCTT

Download sequence region

Download sequence (2.9Kb)

Get flanking sequences on SL2.50ch01

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g095080.2.1	SL2.50ch01:86453488..86456010	486	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g095080.2	SL2.50ch01:86453267..86456196	2,930	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g095080.2.1.1	SL2.50ch01:86455840..86456196	357	-	n/a
exon	exon:Solyc01g095080.2.1.2	SL2.50ch01:86455613..86455741	129	-	n/a
exon	exon:Solyc01g095080.2.1.3	SL2.50ch01:86455367..86455527	161	-	1
exon	exon:Solyc01g095080.2.1.4	SL2.50ch01:86453267..86454485	1,219	-	n/a
intron	intron:Solyc01g095080.2.1.2	SL2.50ch01:86455742..86455839	n/a	-	n/a
intron	intron:Solyc01g095080.2.1.3	SL2.50ch01:86455528..86455612	n/a	-	n/a
intron	intron:Solyc01g095080.2.1.4	SL2.50ch01:86454486..86455366	n/a	-	n/a

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Accessions	Seedlots
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