Sol Genomics Network

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Solanum lycopersicum gene Solyc04g076850.2

Name Solyc04g076850.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc04g076850	Length 4,184

Description

Auxin responsive protein (AHRD V1 *-*- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein

Location(s)

SL2.50ch04:61761281..61765464

GFF source

ITAG_eugene

From BOGAS: 1

Length: 4184

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc04g076850.2.1	SL2.50ch04:61761281..61765464	1,545	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc04g076850.2 SL2.50ch04:61761281..61765464
GATTATTAGAGTGATCTGTAATTGTGATGTCTCCGCCGCTCCTTGGTGTTGGGGAGGAGGAGGGCCAGAGTAATGTAACT
CTACTGGCTTCTTCAACTTCCTTAGGAAGCATATGCATAAAAGGATCAGCTCTTAAAGAGCGAAACTATATGGGTCTATC
TGATTGTTCGTCGGTGGACAGCTGTAATATTTCCACCTCATCAGAGGACAATAATGGGTGTGGATTAAATCTCAAGGCAA
CGGAGCTCAGGCTCGGTCTACCTGGATCTCAGTCTCCCGAAAGAGGTGAGGAGACTTGCCCTGTGAGCTCGACAAAGGTT
GATGAGAAGCTGCTCTTCCCCTTGCACCCTTCCAAAGATACTGCTTTCTCGGTATCGCAGAAAACAGTAGTTAGTGGCAA
CAAACGAGGATTTTCAGACGCTATGGATGGATTCTCAGAGGTGAACTATCATTTCTTTAATAAGGTTACTCATTTTTTGG
TAAAGCTGCAATTGAAGTTACATAATCTATCCTACAGGGGAAGTTTCTGTCGAATTCCGGTGTGAAAGCAGGTGATACAA
AGGAGACCTCACGTGTGCAACCACCTAAAATGAAAGATGCTAATACTCAGAGTACAGTTCCAGAGAGGCCTTCTGCTGTG
AATGATGCCTCAAACCGTGCGGGCAGTGGTGCCCCTGCTACAAAGTGAGTATCTCCCCACTAGGAGTAAGAAGTGTGATA
TTTGGATAATGATTGTACAAAATGTCTAATCTGTATCTTGGATTAATTTTAGGGCACAGGTTGTTGGTTGGCCACCCATT
CGATCTTTTAGAAAGAACACTCTAGCCTCTGCCTCGAAGAATAACGAAGAGGTTGACGGAAAAGCTGGCTCACCAGCTCT
TTTTATTAAGGTCAGCATGGATGGTGCTCCCTATTTGAGGAAAGTGGACCTCAGAACCTGTTCTGCATACCAGGAGCTAT
CTTCTGCTCTTGAAAAAATGTTCAGCTGTTTTACAATAGGTTAGCTATTTTGGAGCCTTTAGTAGCTCATAATTTCATTG
ATTGGATTAAAATAGTAAGATACATGTTCATGATTTTTCCATTGCCCTAGTTACTGCTACTTCCTTGTTATGACAGGTCA
ATATGGATCTCATGGAGCTCCTGGGAAGGATATGTTAAGTGAGAGCAAATTGAAGGATTTGCTTCATGGATCTGAGTATG
TCCTCACTTACGAAGATAAGGATGGGGACTGGATGCTTGTCGGTGATGTCCCCTGGGAGTAAGCTCTTGCTAATTCAACT
CCTTTTTCTTTTCTTCCCGTTTAGCACTGTTTGGTATAGTTTACTACATTTTCGGCCAACCTATTTCTTGGTTGTATGCT
TTTTCCATTGAGATAAAAAGAAGAATATAGTGCACGTGGTGTGGATTTAGTAGTAAATGTGGACTTGGTGCAACTGATAG
TAAATACAACTCATCTTCAGATTCAGAAATAAAATTAGACTAGTCAGTCCTCATCTTAAGGAAGTTAAACAAGTTCTTGT
ATAACTGCAAGCTTAGAGAGCAATGATGCTCTAGTAAGTCCTAAATTAAAGTGGAAATCTCAAACCTGACCCATAATTAG
GTTCTCTGAATTGAGAAGCCTTGCCATGCAGTAAGAGTTCAGGTAGGTTTGGCCTTGTGTTACAAGGAAGATCTTTTTTT
TTTGATTGATAGAGCTTTTAAGGAGATTGATTATAATGAAGTCTGATTGAATTAATAAATCAGCAAGTTAATTTTGAGGG
CCATCATTACTACTTACCATTTTAGAAAACTCATGGCTCATTTTGTATGTGTATAATGCTATGTATGAAAATATTTGCCA
TGGTTAAGCATGTAGTCAGGATTTTTATCAATCAAGATTCATGCTGCCTTCAGTTATGGATTATAATTTCTTATCTCTAG
CATGAATAGAAAAACCAATAATAATCTGATTTTTTGATAATGCCAAAGGATTAAGGGATGATAAACGTAACTAGAAGAAT
TTGGTATCATTGTTGGTTTGACACTCAACTAGGATTCAATGATATTGCTAGTGTGTGTTAGATAGCGATTGCGCTGCTTT
GGGAAAAAATGCCTAATAATCCGTGTGACATTCAACTCTTGCTTCACATGTGTCCCATTGTTAGTGGTGCTATTCCATGT
AATTTGCACAGCTTGATTCAGGGAGTTAGTCCTCTTTCTGTCTCTCTCTAGTTCGCTTTATCTCCCTTCTTTTTTGTTCT
TTTGCAATGATGAATCTGGTGGTCTACTATAACAATGGTAGACCTGAACATATTGTTTTCTTGAATCTGTTCTCTCTTGG
ACCATATAAAAATACCAGTAGTACATTTATTAAGGGCTGTTCTTTGCAAGTTCTAATATCTTAGGTTCAGACTTGTAATA
AATTTTATTGAATGTAGTTTCTGTTTGATTGTTTGTATATTTGACGATGACCATGCTTTTAATTCCTAATATTTTCATGT
TGTAGGATGTTTATCGATACTTGCAAAAGGTTGAGGATCATGAAAGGTTCAGATGCCATTGGCCTGGGTGAGTATCTCTT
GTTGAGCCTTAGACCTCTTCATTCACACAATCAAAATGAAAAACGGAAAGAAAGACCGTCTCCTCCTTCATCTCCCCCGA
CCTTGTTCTTAGGGCTTGTACTTCTGTTTTTGTATTTTGACATGCATAACCATTTGGCGAGAGATGTGGGGCTTGCTCAA
GTGGTTCAGCACCTCCACCATCAACTGGTAGGTTGAGGTTTAGAGTTCGAGTCATGCTGGAGTGTTAGTGGGAATACTAG
TGATCTTCCGGGAGGGTAGAAAAAAAGGGGAAAAACAACTACTTGGTGATAAATAGAAATATACAAACTGTAACGCAGAA
TTATCTGGTTTCAACATTTGATTTCTGTGAATCTTGATTACTTTCTATGATTTGAAACAAAACTTCCTTGCAAGTTTCAT
ATTTAAAAGATATTATTGAAGAAATAATTAGAAGTCATGAAATGCTGGTTTAGGAATTCTCCCACCCAGCTGTTCGTCAT
GAAAGTTCTCTGAATTACCGTGATGCATTTTTTCAAGTAGCGTTAAGTATTAGAGAATTGCTTGCCTGACAGAACTACAT
TTGTTATGGATCTGGCCTCATTTTATTATTTGTCAAGCGGCAATAGAAAGATTTAGGACATCAAGGTAGGCTAGGCATCT
TGAAATGGTGGTGGTAGGTTCATTTGCATTGTAGGACACACCTGCATCTGTGAGAGATGAGGATGGAGAGTGAAGGAGAA
TGGTTAATGTAGTCCCAAAACCGAAAGGAAACGAGCTATAAGTTATTGTAAATCTATGGGCAGTGTTATGCAGTTATTGC
TGTTTTAAACATGTGAGTTAGTCAGCTTTATCTCATTATAAAAGGGCAAAGGGGATAACAAACTCAGCTGTTATAATTTC
CGCAAAAGTTCTGTTACCCAATAATGCATTTCCATATGCTGATTTGTGTGCAGACTTCGGATAGGTCTTTTATTAATCTG
TAAGTGTGTTTAGTCTATGGTAATGCAACTCTAGTTTAATTTTTGGTATTGGTTGCAACATTTCAACGACCAACTCCTGC
TCCTAAGGTATGAATGATTACCTACGAAACGGAAACATGTTACAATTCCACTAACTTCTGTGCATTTTTATGTGCAGCCC
CAAGGGCTATGGAAAAGTGTCGGAGCAGAAATTAGCCTATCTACACATGATTAAAGCTATCCATCCAGCATTTCTAGTAG
GCGAGGAAGACACAAAAACGGGTGAAGAGCTCATAAACTTGAATCCTTTTTAAAGGCATGAACAGTATAGCTGGTTGTTG
GTCTTGGATAGCTCAGCATGGGTAGATGCTTTACCTGATTACGACATGGTGTTCTTTTATATTTGCGTAATATATGTCCT
CTTTTAAGTTTTTTTTATCATGTCTATTTAAAAAACCGTTTGATATTGGAGTTTGTCTGCAAACTAATGTGTGTTGTGTA
CTGAGAGCTCTTCTAGAGGTAATTTAGTAATGTTCTAAGTGTATTTGCTTGTTTAAGTTCCCTTAAGTGTGTACTTTAGA
CCCAACGTTTGTCGTTTGATTAAGTATGCGTGTGCACTTCAGAAATTGTTATTACTGTATGAATAAATGTGTCCTCCACA
TTTTTCATCGGGTTGTAGTTATCG

Download sequence region

Download sequence (4.1Kb)

Get flanking sequences on SL2.50ch04

mRNA Solyc04g076850.2.1

Ontology terms

terms associated with this mRNA

GO:0003700 – sequence-specific DNA binding transcription factor activity

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc04g076850.2.1	SL2.50ch04:61761306..61764995	350	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc04g076850.2	SL2.50ch04:61761281..61765464	4,184	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc04g076850.2.1.1	SL2.50ch04:61761281..61761720	440	+	n/a
exon	exon:Solyc04g076850.2.1.2	SL2.50ch04:61761798..61761964	167	+	n/a
exon	exon:Solyc04g076850.2.1.3	SL2.50ch04:61762053..61762279	227	+	n/a
exon	exon:Solyc04g076850.2.1.4	SL2.50ch04:61762397..61762538	142	+	1
exon	exon:Solyc04g076850.2.1.5	SL2.50ch04:61763766..61763827	62	+	2
exon	exon:Solyc04g076850.2.1.6	SL2.50ch04:61764958..61765464	507	+	1
intron	intron:Solyc04g076850.2.1.1	SL2.50ch04:61761721..61761797	n/a	+	n/a
intron	intron:Solyc04g076850.2.1.2	SL2.50ch04:61761965..61762052	n/a	+	n/a
intron	intron:Solyc04g076850.2.1.3	SL2.50ch04:61762280..61762396	n/a	+	n/a
intron	intron:Solyc04g076850.2.1.4	SL2.50ch04:61762539..61763765	n/a	+	n/a
intron	intron:Solyc04g076850.2.1.5	SL2.50ch04:61763828..61764957	n/a	+	n/a

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Related views

Genetic loci

Tomato locus e (entire)

http%3A%2F%2Fsolgenomics.sgn.cornell.edu%3A8080%2Ffeature%2F17804845%2Fdetails feature 17804845

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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