Sol Genomics Network

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Solanum lycopersicum gene Solyc05g007160.2

Name Solyc05g007160.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc05g007160	Length 4,122

Description

Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor

Location(s)

SL2.50ch05:1752928..1757049

GFF source

ITAG_eugene

From BOGAS: 1

Length: 4122

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc05g007160.2.1	SL2.50ch05:1752928..1757049	1,905	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc05g007160.2 SL2.50ch05:1757049..1752928 (sequence from reverse strand)
GGTTCTTTTTATATAACATTCACCCAAAAGGGTGTTTTTTTTTTTTATAATTTTACTATAGCATGCTTGTGTTGAGGGAA
CAAAGAAGGAGGAAAATATGCAGAGTGGTATGAAGAAAAGGGTAACTACTAATTCTAGTAGTAATGGAAATAGTGTTGAA
GCTGCTAAACCTAAAGAAAGACATATTGTTTCTTGGTCTCAAGAGGTGTGTTTTTGAGTTTAGTGTATTGAGATTTTTTC
AAGAAATGATTTTTTTATGTTTTTGAGTTGTTGGATTGATTGGATTTATGAGATGTAATGGATTTGTTCTGTGTTTTTGT
TGTAGGAGGATGATATACTAAGAGAGCAAATTCGAATTCATGGAACAGACAAGTATAGTTTTGTGTTTCAATGTTCTTTC
ATGGTTTTTTGTTGTTGAAGTTATGATTAGAATCAATGGATTATATGATATATGAATTGAAATTCAAAATTTTGTTTTCT
GTAGTTGGACGATCATCGCATCGAAGTTCAAGGATAAAACAACAAGGCAATGTAGAAGAAGGTTAATAAAAATGAGTTCT
TGATAAAGACACTCACTTTTTTTTTTTGGATTTTTTTATGAAAAAAGATTATAGTTTTGGTTGGTTGTTATCTGCAGATG
GTTTACTTATTTGAACTCTGATTTCAAGAAAGGAGGGTGGTCACCTGAAGAAGATATGCTTTTATGTGAGGTGAAATGAT
GCTTTTTTGATTTACTTCTTTTTTTTAATCTCTCCCCATCACTGTCACTTGTTTTGACACCATTTTGAGCTCAAGTTTGG
TTGATCTTTAGTAGACGATATCGAACATGTAAAGATTGATGCTGCTATAATGTTGTGATTGGAATCTGATAGAGAAAGTG
TAATGTTTGTAGGCTCAAAAGATTTTTGGTAACAGATGGACTGAAATTGCCAAGGTGGTATCAGGCAGGTAATTAGGTTT
TTTGTGTTGCTTTTCTGTGTTTTGTTATGACAGATTGAAGTTGTCATCTGATGTTATTTTTTTTTTCGGAAAAACTTCAG
GACGGATAATGCTGTGAAGAATCGGTTCACTACACTGTGCAAAAAGAGAGCAAAGCATGAAGCTTTGGCTAAAGAAAACA
GCAATTCATTCATTAACCTGAATAACAAGAGGGTTATATTTCCAGATGGTATCAATGTTGACAACATAGCTGAAGCTGCT
GGTCCTATTAAAAAGCTGAGGTAAAAAAAAAAAGAATAACAGCAAGATTTTACTATGGTTTAAAGAAATGGAGTTTCCAG
TATAACACTTTTGATGTAGGCGGAGCGACATTTCAGATGTCCTTCAAATTGGTAACAGCAGAGAAAAATCTGATGGTGAT
TGTGGAACTACTGCACATCCATTGCTGAGACATCCATTTGCGGTACTAGCTCAAAACCTGCATAACACTGGGGAAAGTTT
GGTATCTCATCAGACGACAACTGAAAATGGTAAATGATCTTGAAAAGTAAGAACAGTATATCGTTGACTAGTAAGAGGAA
GTGTCTGATCAGTATTTTTGGATTTTTAAGCAGCTAGTGACAACAGAACTCAAGGAACATTCCTTAAACAAGATGATCCA
AAGAAACAGGCTTTGATGCAACAAGCAGAGCTGCTAAGCTCACTAGCAATGAAAGTTAATACAGAAAATACAGATCAAAG
CCTTGAAAGTGCTTGGAAGGTGAGTCTAAAACTGTGTTTCTCGATACTCTAGTCTACGCTGTTCAGAATAATCCGCTTTA
TAACTATTTAGTTCATCTCTACTTTCTCATGAATTGAACCTTGTTTCTACATGACCTAATTAACTCAATCAGGACAACTA
ATGAACCGTCTACTGTTGTTTAACGATTCATTTCTTTGGCAAAAAAATGGAAGATCCAACTTTAACTCGTTGACAACATA
AGAAAGATAAAGACTGCTTGAGCTGCTAATGCTAAGTTTCTTCAAATGTCCAGCTTCGTTTCTTGTTTCACATAGTTCAA
GAAACTAGTCTGCGCCGAATGTGCAGAAACTCTAATGGAGAAGTGTGAATTTTGTGCAGATACTCCAAGATTTTCTTCAA
CAAACAAAGGATGGTGATACACTCAAGTTCCAGCTACCTGAGATGAATTTTGAACCTGATGATTATAAGAACCTGATAGC
AGATTCAAGAAGCAGTAATGAAGGCAGTCGACCATCTTGGAGGTATTGACCAGTGACCACACAAGCTCACTTTTAACTAT
TCCCAGCTTATCCCATGCCACTGTGTCTAAAATGTCGATGTGCAGGCAACCTGCTTTATCTGAAGATTCTGCTGGCAGCT
CTGAGTATAGTACGGGATCAACTTTGCTATGCCATGCACTGGCTGATAAAACAGAAGAAAGCCAAGCTGAGGTGTGTGCA
CAGCATCAGGATATTGAATCTGAATTACGAACTTCTCAGATGAGTGATCAAGGGGGGCTTCATGAATTAGAAAATGGAAC
CTCCTGCCACATAGCAACCACTCGAGGTACACTCATAATTTGGGGGAAAGACTTCAACGATGCTTCTTTTAGCTCTACAT
CCATAGGAGTTGTTTTAGACTGATACTCGTGGTGATTGTATTATCTCAGATACTTTGCCAGTTTGTGATGAAGAAAAAGC
AAATAATGGACCAGCTACAGCTGAATGTGACTTTCTGAATACAGATTTCAGTTCTCCTCTTCAAGTTACTCCACTGTTCA
GATCTTTAGCTGCAGAAATTCCCACTCCAAAGTTTTCAGAAAGTGTAAGCATTCTATCTCTTGTCAAATATTAAACTGAA
CTTAGGTAAAAAAATTTTTTAATCAAAAGCATCTTCACTTAAAAATGCATTGAACTAATGGATAGAATTGGCCTTTATGC
ATGCTAAATCCATCAAAAGAACTATTACCGTTGCTTAATTGAGATATTAGGAGAGATTTCACAGGGGATTGGAGCAGCAA
CAGACGTTGCTACAAATTTTATCAGTTCTTCGATGTTTCTTATTGAAACTGTGTTACCTGCCTTTTGCACTAAGAAAGTA
GCATAATTAGTCTTTTGACGTGTACAAGTGTGAATATAATCCTACCAAGTATTTCCCATAGTGAACAATAGACAAATTAA
TTCAACTGGAAAGAAGAGTTTTACCTCAGTCGATGGTTCAAAAAGCTCAAGAGAAAGTGTGTTGTTTTCTTTTGTTTTTG
TTCTTTCCTTTGATGTCTCCTTAACACAATTTTTTAAAAGTGCTTTTTACCATGTTTCTTTCCCTATAAAAAATGAAAAA
CTTATAAATATATTATCGAATATTAGTGCTGTCAGCAAAGAACTATGCATCTGTTGTCAACTCTAATATATTGAGTACTA
AAAGGGAAGAAGGAAAAGGACTTAATATGTATATATGACAGGCAACCCCCAAAATCTTTGAGTATAGTGAAGTTGTACTG
GTATTTCAACATAATGCAATTATCTGATTTACTGGTCTCCCAAATCTTTGCCAGAAGGCAACCTCTTAGATATATGTCAA
TTTCTGCTTGTATTAGAAGTTTGGTTTTGGTGATCATGTTTTTTACACTGATTGTCTATTTCATGTAAATTGTGATTCAT
AATTTCAATGTGGTTTCATGTATAGTGTGAAGCAAGGGTGAGATTAACTTTTTCTCAACTGTTTTTTCAGGAGAGGCAGT
TCCTATGGAAAACACTTGGAGTGGAGTCCACATCCATGCATCCAGGCACAAATCTTTCCCAACCTCCATCGTGCAAAAGA
GCCCTCCTCAACAGTCTATAACCAACTTTACTGATCAATCCTTACAAAGATTCTGCGGGGAGCAGTATCACCATAACTTT
GATCAACAGTTCTTCTTATATGTAGTTTACTCAATTTTTGGAGTTCTTTTTGTTTGGATTGCAGTCTCTATGACCTATGT
TTTTTTCAAGAGGCCTTGGAAGATCTGGTCTGCACCCTAGAATGCATCGGAGGCATTCTAGCTTTTTCTCTGGAGATCTG
ACAGATGTCTGCATCCGTTTTTGGAGTTTCCAACCTAATACTCACCAGTATCTAGTGTGTTATTTAATTGTTTCTCATTC
TTTGGTGTGTTGTTGTGGAACTCAAATGGGGGTATTTGATGT

Download sequence region

Download sequence (4.1Kb)

Get flanking sequences on SL2.50ch05

mRNA Solyc05g007160.2.1

Ontology terms

terms associated with this mRNA

GO:0003700 – sequence-specific DNA binding transcription factor activity

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc05g007160.2.1 Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor
GGTTCTTTTTATATAACATTCACCCAAAAGGGTGTTTTTTTTTTTTATAATTTTACTATAGCATGCTTGTGTTGAGGGAA
CAAAGAAGGAGGAAAATATGCAGAGTGGTATGAAGAAAAGGGTAACTACTAATTCTAGTAGTAATGGAAATAGTGTTGAA
GCTGCTAAACCTAAAGAAAGACATATTGTTTCTTGGTCTCAAGAGGAGGATGATATACTAAGAGAGCAAATTCGAATTCA
TGGAACAGACAATTGGACGATCATCGCATCGAAGTTCAAGGATAAAACAACAAGGCAATGTAGAAGAAGATGGTTTACTT
ATTTGAACTCTGATTTCAAGAAAGGAGGGTGGTCACCTGAAGAAGATATGCTTTTATGTGAGGCTCAAAAGATTTTTGGT
AACAGATGGACTGAAATTGCCAAGGTGGTATCAGGCAGGACGGATAATGCTGTGAAGAATCGGTTCACTACACTGTGCAA
AAAGAGAGCAAAGCATGAAGCTTTGGCTAAAGAAAACAGCAATTCATTCATTAACCTGAATAACAAGAGGGTTATATTTC
CAGATGGTATCAATGTTGACAACATAGCTGAAGCTGCTGGTCCTATTAAAAAGCTGAGGCGGAGCGACATTTCAGATGTC
CTTCAAATTGGTAACAGCAGAGAAAAATCTGATGGTGATTGTGGAACTACTGCACATCCATTGCTGAGACATCCATTTGC
GGTACTAGCTCAAAACCTGCATAACACTGGGGAAAGTTTGGTATCTCATCAGACGACAACTGAAAATGCTAGTGACAACA
GAACTCAAGGAACATTCCTTAAACAAGATGATCCAAAGAAACAGGCTTTGATGCAACAAGCAGAGCTGCTAAGCTCACTA
GCAATGAAAGTTAATACAGAAAATACAGATCAAAGCCTTGAAAGTGCTTGGAAGATACTCCAAGATTTTCTTCAACAAAC
AAAGGATGGTGATACACTCAAGTTCCAGCTACCTGAGATGAATTTTGAACCTGATGATTATAAGAACCTGATAGCAGATT
CAAGAAGCAGTAATGAAGGCAGTCGACCATCTTGGAGGCAACCTGCTTTATCTGAAGATTCTGCTGGCAGCTCTGAGTAT
AGTACGGGATCAACTTTGCTATGCCATGCACTGGCTGATAAAACAGAAGAAAGCCAAGCTGAGGTGTGTGCACAGCATCA
GGATATTGAATCTGAATTACGAACTTCTCAGATGAGTGATCAAGGGGGGCTTCATGAATTAGAAAATGGAACCTCCTGCC
ACATAGCAACCACTCGAGATACTTTGCCAGTTTGTGATGAAGAAAAAGCAAATAATGGACCAGCTACAGCTGAATGTGAC
TTTCTGAATACAGATTTCAGTTCTCCTCTTCAAGTTACTCCACTGTTCAGATCTTTAGCTGCAGAAATTCCCACTCCAAA
GTTTTCAGAAAGTGAGAGGCAGTTCCTATGGAAAACACTTGGAGTGGAGTCCACATCCATGCATCCAGGCACAAATCTTT
CCCAACCTCCATCGTGCAAAAGAGCCCTCCTCAACAGTCTATAACCAACTTTACTGATCAATCCTTACAAAGATTCTGCG
GGGAGCAGTATCACCATAACTTTGATCAACAGTTCTTCTTATATGTAGTTTACTCAATTTTTGGAGTTCTTTTTGTTTGG
ATTGCAGTCTCTATGACCTATGTTTTTTTCAAGAGGCCTTGGAAGATCTGGTCTGCACCCTAGAATGCATCGGAGGCATT
CTAGCTTTTTCTCTGGAGATCTGACAGATGTCTGCATCCGTTTTTGGAGTTTCCAACCTAATACTCACCAGTATCTAGTG
TGTTATTTAATTGTTTCTCATTCTTTGGTGTGTTGTTGTGGAACTCAAATGGGGGTATTTGATGT

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc05g007160.2.1	SL2.50ch05:1753268..1756952	489	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc05g007160.2	SL2.50ch05:1752928..1757049	4,122	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc05g007160.2.1.1	SL2.50ch05:1756845..1757049	205	-	n/a
exon	exon:Solyc05g007160.2.1.10	SL2.50ch05:1754544..1754764	221	-	2
exon	exon:Solyc05g007160.2.1.11	SL2.50ch05:1754286..1754440	155	-	n/a
exon	exon:Solyc05g007160.2.1.12	SL2.50ch05:1752928..1753379	452	-	n/a
exon	exon:Solyc05g007160.2.1.2	SL2.50ch05:1756678..1756724	47	-	1
exon	exon:Solyc05g007160.2.1.3	SL2.50ch05:1756509..1756565	57	-	1
exon	exon:Solyc05g007160.2.1.4	SL2.50ch05:1756340..1756412	73	-	n/a
exon	exon:Solyc05g007160.2.1.5	SL2.50ch05:1756102..1756157	56	-	1
exon	exon:Solyc05g007160.2.1.6	SL2.50ch05:1755830..1756009	180	-	1
exon	exon:Solyc05g007160.2.1.7	SL2.50ch05:1755581..1755750	170	-	2
exon	exon:Solyc05g007160.2.1.8	SL2.50ch05:1755351..1755496	146	-	n/a
exon	exon:Solyc05g007160.2.1.9	SL2.50ch05:1754848..1754990	143	-	1
intron	intron:Solyc05g007160.2.1.10	SL2.50ch05:1754765..1754847	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.11	SL2.50ch05:1754441..1754543	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.12	SL2.50ch05:1753380..1754285	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.2	SL2.50ch05:1756725..1756844	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.3	SL2.50ch05:1756566..1756677	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.4	SL2.50ch05:1756413..1756508	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.5	SL2.50ch05:1756158..1756339	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.6	SL2.50ch05:1756010..1756101	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.7	SL2.50ch05:1755751..1755829	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.8	SL2.50ch05:1755497..1755580	n/a	-	n/a
intron	intron:Solyc05g007160.2.1.9	SL2.50ch05:1754991..1755350	n/a	-	n/a

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Related views

Genetic loci

Tomato locus SlMYB110 (R2R3MYB transcription factor 110)

http%3A%2F%2Fsolgenomics.sgn.cornell.edu%3A8080%2Ffeature%2F17814483%2Fdetails feature 17814483

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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