Sol Genomics Network

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Solanum lycopersicum gene Solyc12g008840.1

Name Solyc12g008840.1	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc12g008840	Length 6,471

Description

Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35

Location(s)

SL2.50ch12:2183773..2190243

GFF source

ITAG_eugene

From BOGAS: 1

Length: 6471

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc12g008840.1.1	SL2.50ch12:2183773..2190243	2,175	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc12g008840.1 SL2.50ch12:2183773..2190243
ATGCTAAGGACTAATGTGTTGTTGTTATTAGTTATTTGTTTATTGGATTTTTTTTCTTCAGTGAAAGCTAGTGTTTCTTA
TGATGACAGAGCTATAATCATAAATGGGAAAAGAAAAATTCTTATTTCTGGTTCAATTCATTATCCAAGAAGCACTCCAC
AGGTAAATTATATACAAAAAAAATTGTATTATTTCATTATTTTCTTGTTTTTGGTTGTAAAGATCATTTCTTTACACTTT
GTTATGGATTGTGTGAAATGGGTGTGCTTTGTATTTCTGTAATTCTTGTTTTTTTAAGAATTTTGGTTGTAAAAATGTGA
ACTTTATGCTTTTTTATGGCTTCTGTCAAAAGGGTCTGTTTTGTTTTTCTGTAATTTTTTAAGTTTCTTCTTTATACATT
TTAATGGATTCTTAGAAATGGGTGTATCATGTTTTTGTGTAATTCTTGTTTTTTTTTAAAAGCATTTTGGTTCTAAAAAT
GCAAACTTTATGCTTTTTTTTATAGCTTCTGTAAAAAGGGTGTGTTTTGTTTTTCTGTAATTTTTTAAGTTTCTAAAAAT
CTTTTCTTTATACATTTTTATGGATTCTGTGAAATGGGTTTATCTTGTTTTTCTGTAATACTTGTTTAGTTATGATTTTT
AGTTCTAAAAGTATGAACTTTACACTTGTTTTTCTGTTTATTTAATGTTTTTGGTTCTAAAAATCTTTTCTTTACCCCTT
TCTTATAAACCTATGCGATTATGCTGAGTATGTTATTATTGTTGTTTTGCGTTACTTAAGTCAAAGGTATGTAGGAAACA
AAAGGTAAAAAGACCCTGCTTATGGAATTGTACTGGATATGTCGTTGTTATTATTATTGTTGTTTGTGTTAGTTGAGTCG
AGGGTCTATCGAAGTTATCCTCTCTATCTTCACTTATGTACACGCCACACTTCCTAAACTCCGCTTATGAAATTACACTG
TGTATATTTTTGTTGTTATTATTTGTATTGTTATTTAATTTTTGATTGTAAAAATCTCAAACTTTACATTTTTATGCTCT
ACTTTTTTTGAAACTCTAATATATTGTCATTTTTTTTTCTATTGGTGATTTTAGATGTGGCCTGATCTTATACAAAAGGC
TAAAGATGGAGGCTTAGATGTTATTGAAACTTATGTTTTCTGGAATGGACATGAGCCTTCTCCTGGAAAAGTAATGTCTT
TTTTTTCTTAATTTTTTTTCTTGAATTTATATCATGATTCTGCAATTTAATATCCAAAATGAATTAAAAAAAATTTCATA
TTTTTTTTTTTGAATTTTCAGTATAATTTTGAAGGAAGATATGATCTTGTTAGATTCATCAAAATGGTACAAAGAGCAGG
ACTTTATGTCAATTTACGTATTGGCCCTTACGTCTGTGCTGAATGGAACTTTGGGTATGTTTACTAAAGATACACGGAGT
TCAAGAAAATGACTTTTTTTTTTGAATTTTATTATTTTAAACTAAAAATATGCAAAATATATTAAAATGCTGTTTAATCT
TGTTATGTCAAACATGAAAAAAGTTGATTCTTTTTTAAACGAAAAGTAAGACGAATAAATTAAAACGAAAGGAGTAAAAG
GATTGGCTTTAGTGTCTTTTTTTTTTGTAGCTTCCCCTGTTTTATACTCTGTTTTTATGTTATTTGTATGCAGGGGATTC
CCTGTTTGGCTAAAATATGTGCCTGGTATGGAATTTAGAACAAACAATCAGCCTTTTAAGGTTTTTTTTTTTCCAACTTT
CCATTCGTCTTAAAGTTTGAGTTGTTAGAAAGAGCACAACGTCTCTCTTTGCATGCATGTTAATTCTTTTTTATGAGCTA
TATCATATTGAAATATGTCAGAAAGTACACTTATTTGTTATAGTATATCATGTAACAACGACTCTTCACGTGTGGGGTTA
ATTCTTATTTCTGACTACTTGTTTGTTATGATATCATATTCAAATGTACGACAACCTCATCTAAAGTGACTATATGTTTT
AAGTTAATGTACTTAATTATATCATGTCACAACGACTCTTCACGTGTGGGGTTAATTCTTTTTATAGCCGAAACATGTGG
ACATGTTTTATGTATTTTGAGTGGCGGGGTCAGAGTTTTACCTAGTATCTCTGTTGAAATGTGTGACTATCTCGTTTATT
GAATTATTAGAGAAAATTACATAATTTTTTTTATTAATATTGAGTCTGAACTGTCATGTTTCTGGTTGACTATAATAAAA
GGTGGCTATGCAAGGATTTGTTCAGAAAATAGTCAACATGATGAAGTCAGAAAATTTGTTTGAATCTCAAGGAGGACCAA
TAATTATGGCCCAGGTTTGCATTATGATCATGCCTTGTCTTTACACTATTTATAGAAATGAATTTGGAATTTTTTGTCTC
AGTTTTCCCCCCTAATTCTTGATTAAGGGAGTCGAGCGTTGTTTAGTTTTTTTTGTTTCGTTTATCATACTTATTTGTGG
TTGCTACTGTTCTTTTCTCTTCCTTGAAATGTTGTTTAGTTCCCTAATTCGTGATTAAGGTAGTCGGATGTTGTTTAGTT
TTCCTGTAGTATTATTAGTAATTCCCCTACTATTTGTGGTTGCTACTGCTCTTTTTTCTCCTCTTAATTAATTGTTGTTT
TGTTCACTGATTCTTGATTAAGGTAGTCGAACGTTGTTTAGTTTTTCCCTTAATCCTTATCAGTAGTATTATAAGCCATT
CTCCTACTATCGTACTCTTCGTTGTGTCTTTGCTTTGTTTATCAAACTATTTGTGGTTGCTACTGTTTTTTTCTCCATCA
TTTTCTACAAGTTTCATTTGAGCCAGGGGTCAATCGGAAACAACCTCTCTACCTTCACAAGGTCGGGATACGACTACGTA
CACCCTACTTGTGGAGTTAAACTGGCTATGATGTTGATGTTGTTGTTGTTGCAGATAGAAAATGAGTATGGACCAGTAGA
ATGGGAAATTGGTGCTCCTGGTAAAGCTTATACAAAATGGGCAGCTCAAATGGCTGTAGGTTTGAAAACTGGTGTCCCAT
GGATCATGTGTAAGCAAGAGGATGCTCCTGATCCTGTGGTAAGCAATTTGATATAGGACTTGTTTCAAGGTTCATTTTAG
ACATCTCATATTGTCTTGATTGTGCTACAGATTGATACTTGTAATGGCTTCTACTGCGAAGGGTTCCGTCCTAATAAGCC
TTACAAACCTAAAATGTGGACAGAAGTATGGACTGGCTGGTAAGTATCAAGAACGCGAATTACATGATTCTAATGCAGTT
TATGTTCTTCTGAGTTGGTTTCTTCATTCAACTACTCTATTTAGTCGAATGTTCGTTAATGATATACTCTCTACTATGCT
CAGGTATACGAAATTCGGTGGTCCAATTCCTCAAAGACCAGCCGAAGACATTGCATTTTCAGTTGCCAGGTTTGTTCAGA
ACAATGGTTCATTCTTCAATTACTACATGGTAAGTTAGAACATCTGGTTCCGTGTTCAAGTTTTTCTCGTTAAACATGGC
TATTGTATTGATGTACTGTGGTTGCTTCAGTATCATGGAGGAACAAATTTTGGCCGGACATCATCAGGGCTTTTCATTGC
AACTAGCTACGATTATGATGCTCCTCTCGATGAATATGGTACGAAACAAGAACTAGTATTCTTCTTGTATCTCCACATCT
GCATAACACAGAACGGAAATAATGGAAAATTTCCTAAAAATTATTCATGCTTGTCTTGATGATTTGCGTTATGGTGTAAA
AGGGTTGCTGAATGAACCAAAGTATGGGCACTTGAGAGACTTACATAAAGCTATCAAGCTATCTGAACCGGCTTTAGTTT
CATCATATGCTGCGGTGACTAGTCTTGGAAGTAATCAAGAGGTTAGTCTGTTTTTTTTCCCTTTGAGTCGAGGGTCTATT
GGAAGCAGCCTCTCTATCTTTAAGGTAGGGGAAAGGTTTATGTATACTCTATCCTCTCCAGATCCCACTATGTGAGACTA
CACTCGATATGTTGTTGTAATTGTCGTGATTTTTCTTCTAACGCTGTTTACATTTTTTTTGACCAATATAGGCTCATGTT
TATAGATCAAAATCTGGAGCTTGTGCTGCTTTTTTATCCAACTATGACTCTAGATATTCAGTAAAAGTCACCTTTCAGAA
TAGGCCATACAATCTGCCTCCATGGTCCATCAGCATTCTTCCCGACTGCAAAACTGCCGTTTACAACACTGCACAGGTAT
AGTTTAAATAAATAAATACCGTCAGTCCTCTCTATAACCGTCATTCTCTATAGCAACATTTCTCTGTCATAGTCTATGTC
ATTTGTGGAACCGATCTTTCATGTTAATGCTATATTATATGTTTTCTATAACAACACTTTGCTATAGCAGCCCAAAAGTA
CTGAAACAAATGATGTTGTAATGAGGCAGTTATAGAGAGGTTTGACTGTATAAGCATTTGGGCCAGAAGTTTTAATGTCT
GCTTGTGTAATGCTGCAGGTTAACTCTCAAAGCTCGAGCATAAAGATGACGCCTGCAGGTGGTGGATTGTCTTGGCAGTC
ATACAATGAAGAAACGCCTACTGCTGATGACAGCGATACACTTACAGCTAACGGACTATGGGAACAGAAAAACGTCACAA
GAGATTCATCAGACTATCTGTGGTACATGACAAAGTGAGTAACTTACATTTTCCTACTTTTTTCGAATGATTATATTTAG
TTCCGTCTTCACTCACACATATCTATATCTAATATCATAATGACTTTTTTTGTTACTTTTTCCAGTGTAAATATAGCATC
TAATGAAGGATTTCTAAAGAACGGAAAGGATCCTTATCTCACTGTTATGTCCGCTGGTCATGTCTTGCATGTTTTCGTCA
ATGGAAAACTATCAGGTAGCGGAAACAACACTATTTTGGGATTATGGCAAATGCTTTTCCCTAACAGACTACTTCTCTCA
GTTCCAATTTGTCTGACTTGACACGAAATTTAAGAAAGTAAAGTTTGAATCTTGTGGCCTTAAACATGTCACGTGGAGTA
GAGAACAAAGAGTTGCCCTAAAAAAAGAAAAGAGACATTCTTTTTGAAACGGACTAGAAAGGGATAGTAAAACAAACAAA
TTGAAACGGACAGAGTACATCTTTTGACGTCTATTCCTGTTTTCCTAACATCTCTTTGTCCTTGAATTGTTGTAGGAACT
GTTTATGGTACATTGGATAATCCAAAACTTACATACAGTGGCAACGTGAAGTTAAGAGCTGGTATTAACAAGATTTCTCT
GCTCAGTGTTTCCGTTGGTCTCCCGGTTAGTTTTCTATTTCCTGTTTCTCCGATCCTTTATTAGCACCGATAACCAAACC
TTTAAAAAAAAATATAACCTATGGTTTTAACTACATTTCAGAACGTTGGCGTGCATTATGATACATGGAATGCAGGAGTT
CTAGGTCCAGTCACGTTGAGCGGTCTCAATGAAGGGTCAAGAAACTTGGCGAAACAGAAATGGTCTTACAAGGTATGTTA
ACTAACTAATTGCTTCTCTTCTCCCCCTAAAGCCTGATCTTCGTATAACTTTGATATGCTTTTCCTTGAGCCGAGGGTCT
ACCGGAAACAACCTCTCTACCTCCCAAGACCTTACCTGTGGGATTACACTGCATATGTTGTTGTTGATACCTGAATAGTC
TATACTTTGCTTGTTCATAGGTTGGTCTGAAAGGCGAATCGTTAAGTCTTCACTCCTTAAGTGGGAGTTCTTCTGTTGAA
TGGGTTCGAGGTTCACTAGTGGCTCAAAAGCAGCCCCTGACTTGGTACAAGGTAAATTCCTACTGGTATAACATCAACAA
ACTACATATCAACACGTGTTTATCGATTATATGAAGTTGAATAGCGTGTAACACATAGTTAACAGACTAACATACGTTTT
CCAGGCTACATTTAACGCGCCTGGAGGAAATGATCCACTAGCTTTAGACATGGCAAGTATGGGAAAAGGTCAGATATGGA
TAAATGGTGAAGGCGTAGGTCGCCATTGGCCTGGATACATAGCACAAGGCGACTGCAGCAAATGCAGTTATGCTGGAACG
TTCAACGAGAAGAAGTGCCAGACTAACTGCGGACAACCTTCTCAGAGATGGTAAGCACATTTCCAACAACCTTTAACGGA
GTTATAGGATCACATGAGGTAGAACTACAGTCTGTATGCACTCTACCTTCCCTAGACCTCATTCTGCGGGAATACACTGA
GTATGTTGTTGTTGTTCCATAGGATCACACAGACGAACAAAACGCAACATGTTTGAAGAAATGTGATACTTTTTTTTACC
TTCAACTTGCATTAAGATACTTCGCGAACTTGTAAATTTCAGGTACCATGTTCCACGATCGTGGCTGAAACCAAGTGGAA
ACTTGTTAGTAGTATTCGAAGAATGGGGAGGTAATCCAACAGGAATTTCTCTAGTCAGGAGATCAAGATAA

Download sequence region

Download sequence (6.4Kb)

Get flanking sequences on SL2.50ch12

mRNA Solyc12g008840.1.1

Ontology terms

terms associated with this mRNA

GO:0005975 – carbohydrate metabolic process

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc12g008840.1.1 Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35
ATGCTAAGGACTAATGTGTTGTTGTTATTAGTTATTTGTTTATTGGATTTTTTTTCTTCAGTGAAAGCTAGTGTTTCTTA
TGATGACAGAGCTATAATCATAAATGGGAAAAGAAAAATTCTTATTTCTGGTTCAATTCATTATCCAAGAAGCACTCCAC
AGATGTGGCCTGATCTTATACAAAAGGCTAAAGATGGAGGCTTAGATGTTATTGAAACTTATGTTTTCTGGAATGGACAT
GAGCCTTCTCCTGGAAAATATAATTTTGAAGGAAGATATGATCTTGTTAGATTCATCAAAATGGTACAAAGAGCAGGACT
TTATGTCAATTTACGTATTGGCCCTTACGTCTGTGCTGAATGGAACTTTGGGGGATTCCCTGTTTGGCTAAAATATGTGC
CTGGTATGGAATTTAGAACAAACAATCAGCCTTTTAAGGTGGCTATGCAAGGATTTGTTCAGAAAATAGTCAACATGATG
AAGTCAGAAAATTTGTTTGAATCTCAAGGAGGACCAATAATTATGGCCCAGATAGAAAATGAGTATGGACCAGTAGAATG
GGAAATTGGTGCTCCTGGTAAAGCTTATACAAAATGGGCAGCTCAAATGGCTGTAGGTTTGAAAACTGGTGTCCCATGGA
TCATGTGTAAGCAAGAGGATGCTCCTGATCCTGTGATTGATACTTGTAATGGCTTCTACTGCGAAGGGTTCCGTCCTAAT
AAGCCTTACAAACCTAAAATGTGGACAGAAGTATGGACTGGCTGGTATACGAAATTCGGTGGTCCAATTCCTCAAAGACC
AGCCGAAGACATTGCATTTTCAGTTGCCAGGTTTGTTCAGAACAATGGTTCATTCTTCAATTACTACATGTATCATGGAG
GAACAAATTTTGGCCGGACATCATCAGGGCTTTTCATTGCAACTAGCTACGATTATGATGCTCCTCTCGATGAATATGGG
TTGCTGAATGAACCAAAGTATGGGCACTTGAGAGACTTACATAAAGCTATCAAGCTATCTGAACCGGCTTTAGTTTCATC
ATATGCTGCGGTGACTAGTCTTGGAAGTAATCAAGAGGCTCATGTTTATAGATCAAAATCTGGAGCTTGTGCTGCTTTTT
TATCCAACTATGACTCTAGATATTCAGTAAAAGTCACCTTTCAGAATAGGCCATACAATCTGCCTCCATGGTCCATCAGC
ATTCTTCCCGACTGCAAAACTGCCGTTTACAACACTGCACAGGTTAACTCTCAAAGCTCGAGCATAAAGATGACGCCTGC
AGGTGGTGGATTGTCTTGGCAGTCATACAATGAAGAAACGCCTACTGCTGATGACAGCGATACACTTACAGCTAACGGAC
TATGGGAACAGAAAAACGTCACAAGAGATTCATCAGACTATCTGTGGTACATGACAAATGTAAATATAGCATCTAATGAA
GGATTTCTAAAGAACGGAAAGGATCCTTATCTCACTGTTATGTCCGCTGGTCATGTCTTGCATGTTTTCGTCAATGGAAA
ACTATCAGGAACTGTTTATGGTACATTGGATAATCCAAAACTTACATACAGTGGCAACGTGAAGTTAAGAGCTGGTATTA
ACAAGATTTCTCTGCTCAGTGTTTCCGTTGGTCTCCCGAACGTTGGCGTGCATTATGATACATGGAATGCAGGAGTTCTA
GGTCCAGTCACGTTGAGCGGTCTCAATGAAGGGTCAAGAAACTTGGCGAAACAGAAATGGTCTTACAAGGTTGGTCTGAA
AGGCGAATCGTTAAGTCTTCACTCCTTAAGTGGGAGTTCTTCTGTTGAATGGGTTCGAGGTTCACTAGTGGCTCAAAAGC
AGCCCCTGACTTGGTACAAGGCTACATTTAACGCGCCTGGAGGAAATGATCCACTAGCTTTAGACATGGCAAGTATGGGA
AAAGGTCAGATATGGATAAATGGTGAAGGCGTAGGTCGCCATTGGCCTGGATACATAGCACAAGGCGACTGCAGCAAATG
CAGTTATGCTGGAACGTTCAACGAGAAGAAGTGCCAGACTAACTGCGGACAACCTTCTCAGAGATGGTACCATGTTCCAC
GATCGTGGCTGAAACCAAGTGGAAACTTGTTAGTAGTATTCGAAGAATGGGGAGGTAATCCAACAGGAATTTCTCTAGTC
AGGAGATCAAGATAA

Download sequence (2.2Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc12g008840.1.1	SL2.50ch12:2183772..2190243	725	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc12g008840.1	SL2.50ch12:2183773..2190243	6,471	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc12g008840.1.1.1	SL2.50ch12:2183773..2183934	162	+	n/a
exon	exon:Solyc12g008840.1.1.10	SL2.50ch12:2187535..2187653	119	+	2
exon	exon:Solyc12g008840.1.1.11	SL2.50ch12:2187844..2188008	165	+	n/a
exon	exon:Solyc12g008840.1.1.12	SL2.50ch12:2188271..2188446	176	+	n/a
exon	exon:Solyc12g008840.1.1.13	SL2.50ch12:2188558..2188667	110	+	1
exon	exon:Solyc12g008840.1.1.14	SL2.50ch12:2188968..2189077	110	+	2
exon	exon:Solyc12g008840.1.1.15	SL2.50ch12:2189174..2189284	111	+	n/a
exon	exon:Solyc12g008840.1.1.16	SL2.50ch12:2189473..2189583	111	+	n/a
exon	exon:Solyc12g008840.1.1.17	SL2.50ch12:2189697..2189902	206	+	n/a
exon	exon:Solyc12g008840.1.1.18	SL2.50ch12:2190135..2190243	109	+	1
exon	exon:Solyc12g008840.1.1.2	SL2.50ch12:2184867..2184962	96	+	n/a
exon	exon:Solyc12g008840.1.1.3	SL2.50ch12:2185074..2185186	113	+	n/a
exon	exon:Solyc12g008840.1.1.4	SL2.50ch12:2185446..2185512	67	+	1
exon	exon:Solyc12g008840.1.1.5	SL2.50ch12:2186014..2186106	93	+	n/a
exon	exon:Solyc12g008840.1.1.6	SL2.50ch12:2186707..2186850	144	+	n/a
exon	exon:Solyc12g008840.1.1.7	SL2.50ch12:2186923..2187011	89	+	n/a
exon	exon:Solyc12g008840.1.1.8	SL2.50ch12:2187136..2187241	106	+	1
exon	exon:Solyc12g008840.1.1.9	SL2.50ch12:2187323..2187410	88	+	n/a
intron	intron:Solyc12g008840.1.1.1	SL2.50ch12:2183935..2184866	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.10	SL2.50ch12:2187654..2187843	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.11	SL2.50ch12:2188009..2188270	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.12	SL2.50ch12:2188447..2188557	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.13	SL2.50ch12:2188668..2188967	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.14	SL2.50ch12:2189078..2189173	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.15	SL2.50ch12:2189285..2189472	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.16	SL2.50ch12:2189584..2189696	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.17	SL2.50ch12:2189903..2190134	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.2	SL2.50ch12:2184963..2185073	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.3	SL2.50ch12:2185187..2185445	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.4	SL2.50ch12:2185513..2186013	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.5	SL2.50ch12:2186107..2186706	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.6	SL2.50ch12:2186851..2186922	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.7	SL2.50ch12:2187012..2187135	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.8	SL2.50ch12:2187242..2187322	n/a	+	n/a
intron	intron:Solyc12g008840.1.1.9	SL2.50ch12:2187411..2187534	n/a	+	n/a

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Related views

Genetic loci

Tomato locus TBG4 (beta-galactosidase 4)

http%3A%2F%2Fsolgenomics.sgn.cornell.edu%3A8080%2Ffeature%2F17994019%2Fdetails feature 17994019

Please wait, checking for comments about feature 17994019

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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