Clone hba-62p9

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Clone
Clone name
hba-62p9
LE_HBa0062P09
C12HBa0062P09
P062P09
Clone type
BAC
Contamination
none
Estimated length
135,442
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2254 : [coherent], 1 members:
C12HBa0062P09
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cLET-8-E15Tomato-EXPEN 2000plate 14B4
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 12
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
12
IL-mapped to IL segment
12-E
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 12
HTGS phase
2 - fragmented, ordered
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'italy'
Full Sequence
72,046 bp
C12HBa0062P09.1
AC217335.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (150.40 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • sequence length 72,046 is 46.8% different from estimated length 135,442
 FTP
Chromosome 12 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (23)
1479, 1479, 1855, 1989, 2302, 2944, 2944, 3257, 3373, 3990, 4087, 4549, 4877, 4984, 7274, 7605, 7960, 7960, 8220, 8496, 8496, 9870, 25452
HindIII in silico (20)
1033, 1228, 1328, 1708, 1746, 1800, 2020, 2282, 2662, 2987, 3130, 3318, 3673, 3733, 4253, 5189, 5819, 6539, 7204, 7563
Fragment Lengths Match Score
0.86
Annotations  
Browse
LE_HBa0062P09 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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