Clone hba-165p17

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Clone
Clone name
hba-165p17
LE_HBa0165P17
C09HBa0165P17
P165P17
Clone type
BAC
Contamination
none
Estimated length
76,172
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2816 : [coherent], 3 members:
LE_HBa0117J22, C09HBa0165P17, LE_HBa0179G02
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG591Tomato-EXPEN 2000plate 14E11
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 9
FISH map 
View on FISH map chromosome 9
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
129-23 1CompositeFluorescencePhase94.7%
129-24 1CompositeFluorescencePhase94.5%
129-25 1CompositeFluorescencePhase96.0%
129-29 1CompositeFluorescencePhase94.4%
129-33 1CompositeFluorescencePhase97.0%
129-34a 1CompositeFluorescencePhase94.7%
129-34b 1CompositeFluorescencePhase96.2%
129-39 1CompositeFluorescencePhase96.6%
129-41 1CompositeFluorescencePhase94.0%
Mean±sd95.3%±1.1%

Given an estimated length of 9.7µm for chromosome 9Q and the mean percentage above, this BAC is approximately 9.2µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 9
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
111,462 bp
C09HBa0165P17.1
EF647605.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (357.04 MB)
End Sequences
Warnings
  • sequence length 111,462 is 46.3% different from estimated length 76,172
 FTP
Chromosome 9 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 9
  
Restriction Fragments
HindIII in vitro (21)
1634, 2202, 2486, 2486, 2587, 2587, 2967, 2967, 3114, 3231, 3316, 3569, 3627, 3729, 3930, 4428, 4428, 5081, 5166, 5706, 6931
HindIII in silico (31)
1031, 1141, 1445, 1629, 1637, 1663, 1784, 2163, 2206, 2221, 2471, 2484, 2548, 2587, 2614, 2927, 3105, 3268, 3381, 3618, 3704, 3783, 3966, 4321, 4388, 4827, 4925, 5419, 6886, 6992, 7455
Fragment Lengths Match Score
0.81
Annotations  
Browse
LE_HBa0165P17 has no browsable sequence annotations
Download
 
User commentsNone[Add comment] 
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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