Clone hba-239d11

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Clone
Clone name
hba-239d11
LE_HBa0239D11
C05HBa0239D11
P239D11
Clone type
BAC
Contamination
none
Estimated length
114,794
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg1726 : [coherent], 5 members:
LE_HBa0072D12, LE_HBa0111I14, LE_HBa0142D04, C05HBa0239D11, LE_HBa0282A16
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
CT130Tomato-EXPEN 2000plate 5B7
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 5
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 5 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 5
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Indian Agricultural Research Institute
Full Sequence
145,994 bp
C05HBa0239D11.3
AC182648.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (1535.65 MB)
End Sequences
Warnings
none
FTP
Chromosome 5 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 5
  
Restriction Fragments
HindIII in vitro (27)
1726, 1819, 1876, 2028, 2099, 2099, 2372, 2552, 2666, 2729, 2729, 2917, 3034, 3227, 3361, 3361, 3678, 3678, 4072, 4072, 5064, 5064, 5454, 6172, 7904, 8333, 20708
HindIII in silico (38)
1029, 1090, 1150, 1667, 1727, 1778, 1810, 1855, 1987, 2074, 2125, 2394, 2582, 2670, 2716, 2741, 2760, 2926, 3028, 3183, 3253, 3352, 3364, 3378, 3451, 3685, 3706, 3737, 4055, 4138, 4800, 4845, 4969, 5125, 5950, 7819, 8244, 19143
Fragment Lengths Match Score
0.83
Annotations  
Browse
LE_HBa0239D11 has no browsable sequence annotations
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temporarily unavailable
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End Sequences

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Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
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 Verification

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