Clone Read LE_HBa0197B18_SP6_110282

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0197B18_SP6_110282
Primer
SP6
ID from Seq. Facility
LE_HBa_197_B18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
500 trimmed for vector and quality, 783 raw
Genbank Accession
Sequence
>LE_HBa0197B18_SP6_110282 (trimmed for quality and cloning vector)
CAAATTATGATGCTGTTCAGGGGGCAAATCGCTTCACCTACTACATTCTATAATATTGGAGATGTTGAGATTCAAGATAACGTGGCTCGCATATGGTAAA
AACTGAATCTGTTATCCTTAGATATGAAATGATGCTTGTTGCTGCCTATAATCTGACTTTTTCTCACAATAGGGTGGACATTGGGACTAGTGAGCCTTTA
CTGTTGGATGTATTGATTAATGCTTTGTCACAGATAAGTTCCGAGTAAGCTTCAGTGCCTTTTTCATTTTGAAGTAGAATCTTTTTCTCCCAACCTCAAG
CCATTTTTAGACTCATGATGAATATGCATGGAATGTATCAAGCTATTTTTAGACTCATGATGAATATGCATGGAACATATCAAGCTATTTTATGGACTCA
TTATGAATATGCCTGGAACGCATATTCTATGCAAACCATTTTTGCCAATCGCTACCTTCTTTTTTATAATTTCAATTTATCATATATACTAAGGTTTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.931954
Expected error %
0.749174
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g29400.1 Score 46 E Value 1e-12 Identity 76.00% Align. Length 223bp (44.60%) Frame 2
68417.m04199 expressed protein ; expression supported by MPSS
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU44526.1| Score 46 E Value 4e-11 Identity 76.00% Align. Length 223bp (44.60%) Frame 2
hypothetical protein AT4G29400 [Arabidopsis thaliana] gb|AAX23899.1| hypothetical protein At4g29400 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79698.1| Score 46 E Value 4e-11 Identity 76.00% Align. Length 223bp (44.60%) Frame 2
putative protein [Arabidopsis thaliana] ref|NP_194669.1| expressed protein [Arabidopsis thaliana] pir||A85343 hypothetical protein AT4g29400 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0197B18
Clone
Clone name
hba-197b18
LE_HBa0197B18
P197B18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found