Clone Read LE_HBa0197B18_T7_110283

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0197B18_T7_110283
Primer
T7
ID from Seq. Facility
LE_HBa_197_B18-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
707 trimmed for vector and quality, 917 raw
Genbank Accession
Sequence
>LE_HBa0197B18_T7_110283 (trimmed for quality and cloning vector)
AGCTTAACACGAGTACCAAGAAGTTACCATAAAGATTTCTAAATTTGAGAAGTAAATTGAGTACCTTGCTCGTAGATAATGGAAAAGAGAACTACATGCA
ACTTTATAATTTCTATCAAGTGTTAATTAGCATAATTTCCCGCAAATAATAAACTTTGACAAGAATAAAATGAGTCGATTTAGTCACTCGGTCTACTATA
ACCCAAATTGAATCATATGGTCGCTTGGTGCGAGGTAAATAAACTATGAAGTCCATATTCAAATCGTCCTACTTCTAAATAGGAGTATTAATGTCTTGGC
ATAAACCTCCTGTTTTAATGCTAAACTTTCACGTAGTTGCAATTAGGACACTTAGCCACAAATTCTTCAGTATCCTTTTTCATTCCATTCAACCAATAGA
CCTCCAGCAGATCAAGACACGTCTTTCTTGCTCCTGAGTGAATGGAATACTGAGAACTATGGGCTTTTGAAAAAAATTGTTCCCTCAATGCATAAACATT
AAGAACACATAAATGACCTTGATATCTAAGTACTCCTCTACTCCTTAGGATAAAGCCTCAACGGACTTTATAAGCAACTCTTCTTTAAATTCTATTAAGG
TCAAGTCAAGAGATTGCTTGTCTTTAAGATCCATCAAAAAAGATGATTCTTAACCACTGTGAACCATAACACCACCCAAGGTAGAGTCAAATATCGATTC
TCAACCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.957246
Expected error %
0.657768
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 112 E Value 7e-25 Identity 41.80% Align. Length 643bp (90.95%) Frame 1
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 108 E Value 1e-22 Identity 35.30% Align. Length 682bp (96.46%) Frame 1
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0197B18
Clone
Clone name
hba-197b18
LE_HBa0197B18
P197B18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found