Clone Read LE_HBa0025B04_SP6_135595

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0025B04_SP6_135595
Primer
SP6
ID from Seq. Facility
LE_HBa_025_B04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
686 trimmed for vector and quality, 934 raw
Genbank Accession
Sequence
>LE_HBa0025B04_SP6_135595 (trimmed for quality and cloning vector)
TGAGACTCAGATCTTTTGATTCATCAAGTTCAAGGAAAATGGGCTGTGAAGAACCCAAAGATTATACCTTACGTACAACATGTGCAGAAGTTGTGCAAAA
GATTTCGTAAGATTGAGTTTAGACATACTCCAAGAATACAAAATGAATTAGTTGATGCTCTGGCCACCATCACTTTGATGATTAAACATCCGGATACAGA
TTACATTGATTCTCTGGATATATAGTTGAAAGAACATCCAGTTCGTTGTTCCCATGTTGAAGCAGAACCAGATGGTTTGCCTTGGTATTTTGATATAAAG
AAGTATTTATATTCTTGAACTTATCCCGAAGATGCTACGTCCAATCAGAAGAAGTCGATACGCTGTATGGCTCTCAATTTCTTTCTAAGTGGAGAAGTCT
AGTATAGGAGGACTCAAGACTTAGGTCTTCAGAGATATGTGGATGCCGTTGAAGCTGTAAAAGCTTATTGAACAGATACATGCCGGAGTTTGTGGCACAC
ATATGAATGGACTCACTTTGTTAAGAAAGATCCTACGAGCTGGATATTTCTGGATGACTATGGAGAATGATTGTTGCAAGTTTGTGTAGAAATGTCATAA
ATGTCAGGTGCACGGTGATTTGATACGAGTGCCACCTCACGAGCTTAATGATATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.961655
Expected error %
0.194
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 192 E Value 2e-49 Identity 71.70% Align. Length 450bp (65.60%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 167 E Value 2e-45 Identity 53.00% Align. Length 537bp (78.28%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0025B04
Clone
Clone name
hba-25b4
LE_HBa0025B04
C10HBa0025B04
P025B04
Clone type
BAC
Contamination
none
Estimated length
97,059
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found