Clone Read LE_HBa0012H19_SP6_6132

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012H19_SP6_6132
Primer
SP6
ID from Seq. Facility
LE_HBa_012_H19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
715 trimmed for vector and quality, 910 raw
Genbank Accession
DU025673
Sequence
>LE_HBa0012H19_SP6_6132 (raw untrimmed)
AAAGGATTTCCNTNAGCTATTGATTAATCAAAAATATCAGCATAGAAAACAATCATGCAAAATTCAGACAAATACTAATGAAAAATTAAATTCAAACCAA
CCTTCAGACTGAGAAAACTTGTCAAGCGGTGCATGGCCTACTTTGCCAGCCATCAGTGACTCCAAAAATCTATTTTCAGCCTCTGTTGAGTTATGCTTGT
AATTCATTTCACTATTTACCGTATCAATCTCACTTGAACCTGCATGAAGTTTAGTGAAGCTGCTCGCATTCAAACCCCCTGGAGCATCTGCATTTGGCTT
TGGCGCTCCAAATCCAGGTGGTGGCCGAGCCTTAGCACGCAAGTGGGGCATAACATCCCCCAGCAGATAAAATGGTGAATCATGTGGTGCAGCAGCTAAT
CGAACTAGCAAATCAATACCAAAATATCCAGCCTCAAACCATCCAATAATATCACTACCTGAGAAAGGACCTTGAATTGCACCTTGTGGATCTTTGTAAT
ATAGAACTAGGTCTTCCGGAGATGACTGTGAAATTTTCCTCATCTCCAACTCTTTGTCCATAGCAGCAGATAATTGCCTTTTCAGAATAGGATCATCCCC
AAACTGCCATTTAGATCCTTCGTTTTTGGTGTAAGAAGGATCTGTAAGATCTCTTTCCCGATCAGTATTCTTATCTTTCTGGCTCTGTAGCCATCCAATA
TCAGATGTTCTTGACCTGATATCCGTTGGCAAATCTCTAGCATCATTAGCCGGCAGATGTGAACGTGCACCAATTGAAGAGGATCGCCATAAGCCGCCAC
CATGAAGAAACAGTGAGTGGTCCTGGGGTTGCTTGGATCTCCAATTGACAGACTCCCCATTCTTCTATGAAAAAATACCTGTCCCTCCTACTGGAAAAAC
TGAAAAAATT
>LE_HBa0012H19_SP6_6132 (trimmed for quality and cloning vector)
TATCAGCATAGAAAACAATCATGCAAAATTCAGACAAATACTAATGAAAAATTAAATTCAAACCAACCTTCAGACTGAGAAAACTTGTCAAGCGGTGCAT
GGCCTACTTTGCCAGCCATCAGTGACTCCAAAAATCTATTTTCAGCCTCTGTTGAGTTATGCTTGTAATTCATTTCACTATTTACCGTATCAATCTCACT
TGAACCTGCATGAAGTTTAGTGAAGCTGCTCGCATTCAAACCCCCTGGAGCATCTGCATTTGGCTTTGGCGCTCCAAATCCAGGTGGTGGCCGAGCCTTA
GCACGCAAGTGGGGCATAACATCCCCCAGCAGATAAAATGGTGAATCATGTGGTGCAGCAGCTAATCGAACTAGCAAATCAATACCAAAATATCCAGCCT
CAAACCATCCAATAATATCACTACCTGAGAAAGGACCTTGAATTGCACCTTGTGGATCTTTGTAATATAGAACTAGGTCTTCCGGAGATGACTGTGAAAT
TTTCCTCATCTCCAACTCTTTGTCCATAGCAGCAGATAATTGCCTTTTCAGAATAGGATCATCCCCAAACTGCCATTTAGATCCTTCGTTTTTGGTGTAA
GAAGGATCTGTAAGATCTCTTTCCCGATCAGTATTCTTATCTTTCTGGCTCTGTAGCCATCCAATATCAGATGTTCTTGACCTGATATCCGTTGGCAAAT
CTCTAGCATCATTAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.968867
Expected error %
0.0642341
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g42950.1 Score 210 E Value 7e-55 Identity 18.90% Align. Length 602bp (84.20%) Frame 1
68418.m05236 GYF domain-containing protein contains Pfam profile: PF02213 GYF domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g27430.1 Score 84 E Value 6e-17 Identity 13.30% Align. Length 404bp (56.50%) Frame 1
68414.m03343 GYF domain-containing protein contains Pfam profile: PF02213 GYF domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB09197.1| Score 210 E Value 3e-53 Identity 18.90% Align. Length 602bp (84.20%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_199109.1| GYF domain-containing protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_476580.1| Score 170 E Value 3e-41 Identity 18.20% Align. Length 500bp (69.93%) Frame 1
unknown protein [Oryza sativa (japonica cultivar-group)] dbj|BAC83483.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012H19
Clone
Clone name
hba-12h19
LE_HBa0012H19
P012H19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found