Clone Read LE_HBa0012H19_T7_6133

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012H19_T7_6133
Primer
T7
ID from Seq. Facility
LE_HBa_012_H19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
723 trimmed for vector and quality, 882 raw
Genbank Accession
DU025674
Sequence
>LE_HBa0012H19_T7_6133 (raw untrimmed)
GGGGGGTACCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAACTGAAAATCTTTAAAAAAGACCGTTCGAGATACTAAGCTCTCGTCTTC
GACTCCTTTCTCTCTTTTATATATATATATATATATATATATATATATATATATATATATATATATAGTGACAGCTCTTCTTAAATTCCAAAAACAGATT
TTTTGAAATCTACTAATAAATCTTGACTTTTTACTTTAACTTTCTTTAGTTAGAACATCACTTCACTGTCAATTCTCTCTTGAGCTGCCAAGATTCTTGT
TTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAATTCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAA
CACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTT
GTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGA
AAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGA
TAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAG
GTTGAAGAGGTGAAGGAACAAGAATTGGGAAGATTTGAAACCGGATGTGTTTGGAGAAAGGAAAATGAGGAAAACAAAATAA
>LE_HBa0012H19_T7_6133 (trimmed for quality and cloning vector)
AGCTTGAACTGAAAATCTTTAAAAAAGACCGTTCGAGATACTAAGCTCTCGTCTTCGACTCCTTTCTCTCTTTTATATATATATATATATATATATATAT
ATATATATATATATATATATATAGTGACAGCTCTTCTTAAATTCCAAAAACAGATTTTTTGAAATCTACTAATAAATCTTGACTTTTTACTTTAACTTTC
TTTAGTTAGAACATCACTTCACTGTCAATTCTCTCTTGAGCTGCCAAGATTCTTGTTTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAAT
TCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAACACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATC
AATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGC
CTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCC
CATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATG
ATAAAAGTGGAGTTGATAGGAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.925593
Expected error %
0.293853
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g19430.1 Score 67 E Value 1e-11 Identity 12.70% Align. Length 323bp (44.67%) Frame 2
68414.m02421 dehydration-responsive protein-related low similarity to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012H19
Clone
Clone name
hba-12h19
LE_HBa0012H19
P012H19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found