Clone Read LE_HBa0069P07_SP6_84060

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0069P07_SP6_84060
Primer
SP6
ID from Seq. Facility
LE_HBa_069_P07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
491 trimmed for vector and quality, 879 raw
Sequence
>LE_HBa0069P07_SP6_84060 (raw untrimmed)
CCCCTAAGCTTTAGTAAGATTATCTAGCTACTACCGTCTATTCACAAGGGATTTTCTTCTATTGCTTCCCAGCACACTTAATTTGACTAAGAAGAATGTT
CCATTTGTATGGGTGGTACGAATGTGAAGAAAGCTTCCAGAAACTCAAGACCTTGTTGACTACTGCACCAATTCTTACCTTGCTAGTGGAAGGTAAGAAT
TTTATTGTTAATTGTGATATATCTTATTCTGCTTTGGGTGCAGTGCTAATGCAGGAGAGGAATGTAATTGCTTATGCTTCGAAGAAATTGAAAGTGCATG
AACGTACCTATCGACCAATGATTTGGAGTTGGCTGCAGTTGTATTTGCATTAATGCAATAGAGACATTATTTATATGGGATCAAATGTGAATTTTCTACA
GATCATCGTAGTTTACAATATGTCTTTACTCATAATGATTTGAATTTGAGGCAGAGGAGGTGGATGGAACTATTGAAAGACTATAATATTACTATTTTAT
ATCACCCAGGAAAATGTAATGGTGTGGCAGATTTTTAAAGGACATAAGCAGGGAGCTATGGGTAATTTATCCCTCATACAGGTCTCCAGATTCGCATTGG
CTTGAGAGGTTCAGACTCTGGGCTGTGACCTCATAACGCCGGAACTACAAACATAAAGCGGATTTTTGCCTGGGTGGAAACAACAACTTCATTTTATTAC
ACCATTCCAAAGAAGTAGTTTGGCGCACAAAGGTCCCCCGACTCTTATATTTGCTTGTTTCAGGACAGGTTAAATATCAACTTTTGATATCGATCATCGG
TATTAAACTAATGCAAGGTTGATAATTGATGGTGCTAATACATGATTAATAACTATAACTTAATGGATGACATTATATA
>LE_HBa0069P07_SP6_84060 (trimmed for quality and cloning vector)
CTACTACCGTCTATTCACAAGGGATTTTCTTCTATTGCTTCCCAGCACACTTAATTTGACTAAGAAGAATGTTCCATTTGTATGGGTGGTACGAATGTGA
AGAAAGCTTCCAGAAACTCAAGACCTTGTTGACTACTGCACCAATTCTTACCTTGCTAGTGGAAGGTAAGAATTTTATTGTTAATTGTGATATATCTTAT
TCTGCTTTGGGTGCAGTGCTAATGCAGGAGAGGAATGTAATTGCTTATGCTTCGAAGAAATTGAAAGTGCATGAACGTACCTATCGACCAATGATTTGGA
GTTGGCTGCAGTTGTATTTGCATTAATGCAATAGAGACATTATTTATATGGGATCAAATGTGAATTTTCTACAGATCATCGTAGTTTACAATATGTCTTT
ACTCATAATGATTTGAATTTGAGGCAGAGGAGGTGGATGGAACTATTGAAAGACTATAATATTACTATTTTATATCACCCAGGAAAATGTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956554
Expected error %
1.11306
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM12313.1| Score 103 E Value 2e-30 Identity 70.10% Align. Length 394bp (80.24%) Frame 1
putative polyprotein [Oryza sativa (japonica cultivar-group)] gb|AAP54735.1| putative polyprotein [Oryza sativa (japonica cultivar-group)] ref|NP_922448.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM93447.1| Score 100 E Value 3e-30 Identity 39.70% Align. Length 406bp (82.69%) Frame 1
putative polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0069P07
Clone
Clone name
hba-69p7
LE_HBa0069P07
P069P07
Clone type
BAC
Contamination
none
Estimated length
97,521
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found