Clone Read LE_HBa0069P07_T7_84061

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0069P07_T7_84061
Primer
T7
ID from Seq. Facility
LE_HBa_069_P07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
342 trimmed for vector and quality, 878 raw
Sequence
>LE_HBa0069P07_T7_84061 (raw untrimmed)
ACTAACCCGGGTCCCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCACCTAACTGAAATTGTGAGCCCTTATGGGGTTCCTTTGTCACCAT
CTCAGATAGGGGTCCTCTGTTTACCTCTCATTCCTGGAAATCATTTCAAAAAGGTCTTGGTACTCAAGTTAACCTTAGTGCATCATTTCATCCACAAACG
GATGGGCAGGCAGCGCGTACCATTCAGAACATAGAGGATATGTTGAGAGACTGTGTGATTGATTTCAAAGGTAGTTGGGATGATCACCTTCCTCTTATTG
AGTTTGGGCATAATAATAGCTACCATTCCATCATTCAGATGGCCCCTTATGAGGCATTATAGGGGCGTAGATGCAGATCTCATGTGGGTTGGTATGAAGT
ACGGGAAGCAACTATGAACGGGCCAAGATTGCGCTCTTTATGCTAAGGAGAAAGGGAAACGCATTATAGAGATTACCTAATACATGCCTTACTCAACAGA
GATCTTATGAAGAAGAAAGGAGATTAGACCTACACTTCACAAGCTCATGAAAGTATGTTACTGAAAAATTAATAAATATAATCTCCAAAACTTTTCAACA
ATGTTTTGAAAACCCACTCACTAGTTTACTTTCGGCCTCCAACGACTTGACCAGCATAGCCTAGAGCGTTTTCAACTACACCTACTCCCATATTACGCTC
ACCACGACTCTGCTCCTACCTCTCCACACTAAAAAACAGCAAAAGTCTTCCACCGACTACATATCTCATAAGATACAAGACTAGCCAATCACTACTACAT
CATATGTTACTTCACTACAATTCTGCATATCCGATTAACGTTGACTATGATAGTAACGTGGTGGAGGACAGAAAGAAG
>LE_HBa0069P07_T7_84061 (trimmed for quality and cloning vector)
AGCTTCACCTAACTGAAATTGTGAGCCCTTATGGGGTTCCTTTGTCACCATCTCAGATAGGGGTCCTCTGTTTACCTCTCATTCCTGGAAATCATTTCAA
AAAGGTCTTGGTACTCAAGTTAACCTTAGTGCATCATTTCATCCACAAACGGATGGGCAGGCAGCGCGTACCATTCAGAACATAGAGGATATGTTGAGAG
ACTGTGTGATTGATTTCAAAGGTAGTTGGGATGATCACCTTCCTCTTATTGAGTTTGGGCATAATAATAGCTACCATTCCATCATTCAGATGGCCCCTTA
TGAGGCATTATAGGGGCGTAGATGCAGATCTCATGTGGGTTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.979968
Expected error %
2.00808
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 161 E Value 5e-39 Identity 25.80% Align. Length 290bp (84.80%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 161 E Value 5e-39 Identity 25.80% Align. Length 290bp (84.80%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0069P07
Clone
Clone name
hba-69p7
LE_HBa0069P07
P069P07
Clone type
BAC
Contamination
none
Estimated length
97,521
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found