Clone Read LE_HBa0143A01_SP6_88704

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0143A01_SP6_88704
Primer
SP6
ID from Seq. Facility
LE_HBa_143_A01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 608 raw
Sequence
>LE_HBa0143A01_SP6_88704 (raw untrimmed)
AAAAAAAAAAAAATTTTTTTTTAAGGACCCTCAAAAGGGGGNNNATTTTAGTTTGGGNNAAAAGAAGAGAGNGAAAAGAAAGGGAAGAAAAAATAGATCC
AAGGGGGGNGNNNTATATNAGANAAAGNAAAAAAGAGAAAGAGAAAGAGGGGAAGGGGGGGGAGNNNNNGGANGAAAGGAAAAGAAGGAGAAAAAAAGAA
AAAAAAAAAGAAGGAAGGAAAAGAGAGGGGAAAGAAAAAGAAGAAAAAGAGAGAAAAAGAAAAAGAAAAAGAAAAAAAAAAGAANAAAANAAAAGGAAAA
AAGAGAAAAAGGAAAAAAAGGAGAAAAAAAAAAAAAAAAAAGAAAGAAGAAAAAAAAAAAAAAGAGAGGAGAAAAGAAGAAAGGAAAAAAAAGAAAAAAA
AAAAAAAAAGAAAGAAAAAAAAGAAAAAGAGNAGAAAAGAAGGGAAGAAGGAGGGGAAGGGGAAAGAAAAAAAAGAAAAAAAAAAAAAAAGAAAAAAAAA
AAAGAAGAAAAAAAAAAAAGAAGAAGAAGAAAAGAAAGAGGAGAGGGGAGAAAAGAGAGGAAAAAAAAAAGAGAAAGAAGAAAAAAAAGAAAAAAAAGAN
GAAAGGAG
>LE_HBa0143A01_SP6_88704 (trimmed for quality and cloning vector)
AAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.54415
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0143A01
Clone
Clone name
hba-143a1
LE_HBa0143A01
P143A01
Clone type
BAC
Contamination
none
Estimated length
105,776
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found