Sol Genomics Network

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Solanum lycopersicum gene Solyc09g090910.1

Name Solyc09g090910.1	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc09g090910	Length 2,917

Description

Auxin responsive protein (AHRD V1 ***- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein

Location(s)

SL2.50ch09:70314836..70317752

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2917

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc09g090910.1.1	SL2.50ch09:70314836..70317752	849	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc09g090910.1 SL2.50ch09:70317752..70314836 (sequence from reverse strand)
ATGGAACCAATTCTTAGTGAAAAAGGTACAAAAATGGAGCAAGATTACAATATGGGTATGTGTTCTGAGGATGAAACAGA
GCTTGAGTTGGGGTTAGGTCTTAGCCTTAACAGTGGGGGTGGGGGTGGTGGGGTGGGGGGAAAGACTAAGAAATCACCAT
GGGGTGAGTATGGTAGGATTTTAACTGCTAAAGATTTTCCTAATGGATTTTCAGCTAAGAGATCCATTAATGTTGGTGTT
TCTGGTACTAAAAGAGCTGCTGATTTTGCTGGTTCTACAACTGAGGTTGGATCTCCTCCTACTGGTGCAAGGTTAGAATT
TCACAACTTTTTCATAAAAATGTGTTCTTTTTTCTAAAGTTAGTATATTTCTTGCATTTTTAGTCATGGTGGCATGTTTA
GTTTACTCAAAGGGTCTTAGTGATTTTAGGTTCCCATGTAAAGTTTTCATTTTTTCCAAGAATTTCATAAATTTTCATAA
AAATGTGTTCTTTTCGCTAATTTTAGTGATCTTTTTGCATTTTCTTCATGTTTAGTCATGGTGGTATGTTTAGTTTTCTC
AAGAAATTGTGTATCTCAAAAGGGACTAAATGATTTTAGGTTCTTATGTAAAGTTTCTTTTTTTTTCTTAGGATTTTTGT
CATGTGTTCCTTGAATTTCTCTTTGCTTTTGTTGTTTGTTGGTTCCTAAAGCAGAGTTCTTTCATTTGATTTTAGAGCTT
TTACATTAATTTCATGACTAACAATGAAGTTTAAGTTTAGTTTACTCAAGAAATAGTGTATTCCTTGAAGGGTTTTAATG
ATCTTGAAGAAAAGTTCTTTCCTTTAATATTACAATTTTTCTTACATTAGTTTCATGTTTGTCTATGAAAAGTTGTGTTT
AAGCTACTCAAGAATGGATTTTATTTTGTTTCTTGGATTTTTTTTGTTAGTTAGAGTATATTTTCCTTTAATTTGTTTTA
GCTTTTGTCTTTGATGAGTTATTAGTTTAATTACTGATAGAAGCTGGCAGAGCATGCATCACCTTTTGTTCATCTCATTA
CCTTTAATCTAAAATCTGCCAAAAAAGTTGCTTTTGGTTGCCCAGTCATTATGATAATCTATCATTATATTCCCTCTAAT
CCTACTTTTAGTGCAACTTTGATAATTTTTGACAATTTCTTTTTGTACTTTTTTGAAAAGAAAAAGAAAATCATTTTGCA
AAATTTCATATGCCCTCTTTCCTCTCTTTCTTAACTCTTTTCTTTTGACTTGTTCATTTTAGCTTAGATAACTAAGTTCA
TGAATTTGGATCTTGATGGATGATTGAGTATATAATTGATGATTCATTTATTTTGATTTCTAAAAGCAGTCAGGTTGTGG
GATGGCCACCCATAAGGGCATACAGAATGAACAGCTTGGTTAATCAATCAAAGGTTCTAAATGCTGATGATGAGAAGGGA
GTTGGCGGGAACGATAAGAAGGAGCACTCGAAGAAGAAGATCAATCATGGGAACACTAAGGATGATGCAGCATCGGTTAA
AGAAAAGGGGCATCTTGGTTTTGTGAAGGTGAATATGGATGGTTTGCCTATTGGAAGAAAGGTGGATTTGAATGCTCATA
CTTGCTATGAATCGTTAGCCGAAACCTTGGAGGATATGTTCTTTAAATCTACCAAAAGTACGGGTTCTGTTTCGAAGTTT
ACTTCTTGTTTCGTTACTTAAATTGGCTCTAAATACTAGTTTTCTCGGCCTTTGGCTAAGATCAAGCGTAGTTATTTGTT
TCTCCCATGCATTATACATACTACATAGGCGTGGAATACCCTATTCCACGCCATGTTTTACGGTAGAAAAAGGACTAAAT
GAAACAAATCGGTTGCATGTTTTGTGATGTTTTTGTTATGAAGTGATTGTTGATGTTCCATTTTTTTTTATAGGCGGTGA
AAAGGAACAAGCAACTAAGTCTTTTAAGCTCTTGGATGGATCATCTGAATTTGTGCTCACATATGAGGATAAAGAAGGAG
ACTGGATGCTTGTTGGAGATGTTCCATTCGGGTAAGAAATTCCGTTAATTAGTACTATGTCATTTTTGCAAAAAGCATCG
AAATATTAGAAGCCTAAGTTCTCATCAAGCCCCACAAACCAAAAAAAAGAAGAGAATATATTAGCAAACATGAGGTATTG
ATGATCTCAATTCTCATGTATATATATATATAATATCATATTATATGCATGGTGCTTTTGGTGGACCTAATTCATGAAAG
CAAATGATCACACCTTCATCATCCAACGAGGAAGTACAAAACGAAAACGAATAAAACAATAGGGGCATAAAACTATCAGT
ATAAAGGATATCCATAGTACATCAGTAGCATGGAGAAACACCATCAACCTTGATGTGGTTAGATATATGTAATCGGTCCA
TCTCTAACTAGAGGTCTCATGTTTGAGTCTTGAAAATGAAGAAATTCTTGGAAAGTGTGTTTTTTCCTTAAACGGGCCCT
ACACGTCATGAAAAAGTAGCATAGAAAGTATGATCTTCATTTATGCAAAATCAAGTTGTTATCATTTCTAGCTCCCCACT
CTAGTTCTTTATATGTTCTAATACTTTCATGTGTTATATAGGATGTTTCTCAACACTGTGAAAAGGCTAAGAATCATGAG
GACTTCTGAGGCTAATGGACTTGGTATGTACATAGCCATGCCAAAAGAACACACTCAACCTCTCCTTTTGTTATATTACT
CGAAAACTCTTCAAAAGTACTCCGAGGTGCAGGGTGTGTTAGATCCTCCAAATCCAAAAGTAGTGCATTTTTGGAGAGTC
CGAGCAATATAACCTTTTTGTCATTTTGTTTCCTTAGCTCTAACACTAGTTATTGGTTTACTTTCAGCTCCAAGAATCCC
TCAGAAGCAAGAGAAACACAAAGGAAAACCTATCTAA

Download sequence region

Download sequence (2.9Kb)

Get flanking sequences on SL2.50ch09

mRNA Solyc09g090910.1.1

Ontology terms

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc09g090910.1.1	SL2.50ch09:70314835..70317752	283	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc09g090910.1	SL2.50ch09:70314836..70317752	2,917	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc09g090910.1.1.1	SL2.50ch09:70317442..70317752	311	-	n/a
exon	exon:Solyc09g090910.1.1.2	SL2.50ch09:70316096..70316403	308	-	1
exon	exon:Solyc09g090910.1.1.3	SL2.50ch09:70315722..70315839	118	-	2
exon	exon:Solyc09g090910.1.1.4	SL2.50ch09:70315090..70315151	62	-	1
exon	exon:Solyc09g090910.1.1.5	SL2.50ch09:70314836..70314885	50	-	2
intron	intron:Solyc09g090910.1.1.2	SL2.50ch09:70316404..70317441	n/a	-	n/a
intron	intron:Solyc09g090910.1.1.3	SL2.50ch09:70315840..70316095	n/a	-	n/a
intron	intron:Solyc09g090910.1.1.4	SL2.50ch09:70315152..70315721	n/a	-	n/a
intron	intron:Solyc09g090910.1.1.5	SL2.50ch09:70314886..70315089	n/a	-	n/a

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Related views

Genetic loci

Tomato locus SlIAA13 (auxin-regulated IAA13)

http%3A%2F%2Fsolgenomics.sgn.cornell.edu%3A8080%2Ffeature%2F17939500%2Fdetails feature 17939500

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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