This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.
Tomato locus beta-galactosidase 4
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
New Edit Delete
|
Locus | Solyc12g008840 |
Locus name | beta-galactosidase 4 |
Symbol | TBG4 |
Gene activity | |
Description | Tomato beta-galactosidase 4 (TBG4) is one of the glycosyl hydrolases known to reduce cell wall galactosyl residues in ripening fruit. TBG4 plays a role in tomato fruit firmness. |
Chromosome | 12 |
Arm |
|
|
![]() ![]() |
beta-galactosidase 4 is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch12, position: 2186084
Please cite Razifard et al.
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch12, position: 2186095
Please cite Razifard et al.
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch12, position: 2186796
Please cite Razifard et al.
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch12, position: 2187169
Please cite Razifard et al.
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch12, position: 2187233
Please cite Razifard et al.
Registry name: | None | [Associate registry name] |
![]() ![]() | [Add notes, figures or images] |
Success
The display image was set successfully.
Image | Description | Type |
---|
![]() ![]() | [Associate accession] |
Accession name:
Would you Like to specify an allele?
Alleles (0) | None | [Add new Allele] |
![]() ![]() | [Associate new locus] |
|
![]() ![]() | View beta-galactosidase 4 relationships in the stand-alone network browser |
[loading...] | [Legend] [Levels] |
![]() ![]() |
![]() ![]() |
![]() ![]() |
![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc12g008840.1 SL2.50ch12:2183773..2190243
ATGCTAAGGACTAATGTGTTGTTGTTATTAGTTATTTGTTTATTGGATTTTTTTTCTTCAGTGAAAGCTAGTGTTTCTTA
TGATGACAGAGCTATAATCATAAATGGGAAAAGAAAAATTCTTATTTCTGGTTCAATTCATTATCCAAGAAGCACTCCAC
AGGTAAATTATATACAAAAAAAATTGTATTATTTCATTATTTTCTTGTTTTTGGTTGTAAAGATCATTTCTTTACACTTT
GTTATGGATTGTGTGAAATGGGTGTGCTTTGTATTTCTGTAATTCTTGTTTTTTTAAGAATTTTGGTTGTAAAAATGTGA
ACTTTATGCTTTTTTATGGCTTCTGTCAAAAGGGTCTGTTTTGTTTTTCTGTAATTTTTTAAGTTTCTTCTTTATACATT
TTAATGGATTCTTAGAAATGGGTGTATCATGTTTTTGTGTAATTCTTGTTTTTTTTTAAAAGCATTTTGGTTCTAAAAAT
GCAAACTTTATGCTTTTTTTTATAGCTTCTGTAAAAAGGGTGTGTTTTGTTTTTCTGTAATTTTTTAAGTTTCTAAAAAT
CTTTTCTTTATACATTTTTATGGATTCTGTGAAATGGGTTTATCTTGTTTTTCTGTAATACTTGTTTAGTTATGATTTTT
AGTTCTAAAAGTATGAACTTTACACTTGTTTTTCTGTTTATTTAATGTTTTTGGTTCTAAAAATCTTTTCTTTACCCCTT
TCTTATAAACCTATGCGATTATGCTGAGTATGTTATTATTGTTGTTTTGCGTTACTTAAGTCAAAGGTATGTAGGAAACA
AAAGGTAAAAAGACCCTGCTTATGGAATTGTACTGGATATGTCGTTGTTATTATTATTGTTGTTTGTGTTAGTTGAGTCG
AGGGTCTATCGAAGTTATCCTCTCTATCTTCACTTATGTACACGCCACACTTCCTAAACTCCGCTTATGAAATTACACTG
TGTATATTTTTGTTGTTATTATTTGTATTGTTATTTAATTTTTGATTGTAAAAATCTCAAACTTTACATTTTTATGCTCT
ACTTTTTTTGAAACTCTAATATATTGTCATTTTTTTTTCTATTGGTGATTTTAGATGTGGCCTGATCTTATACAAAAGGC
TAAAGATGGAGGCTTAGATGTTATTGAAACTTATGTTTTCTGGAATGGACATGAGCCTTCTCCTGGAAAAGTAATGTCTT
TTTTTTCTTAATTTTTTTTCTTGAATTTATATCATGATTCTGCAATTTAATATCCAAAATGAATTAAAAAAAATTTCATA
TTTTTTTTTTTGAATTTTCAGTATAATTTTGAAGGAAGATATGATCTTGTTAGATTCATCAAAATGGTACAAAGAGCAGG
ACTTTATGTCAATTTACGTATTGGCCCTTACGTCTGTGCTGAATGGAACTTTGGGTATGTTTACTAAAGATACACGGAGT
TCAAGAAAATGACTTTTTTTTTTGAATTTTATTATTTTAAACTAAAAATATGCAAAATATATTAAAATGCTGTTTAATCT
TGTTATGTCAAACATGAAAAAAGTTGATTCTTTTTTAAACGAAAAGTAAGACGAATAAATTAAAACGAAAGGAGTAAAAG
GATTGGCTTTAGTGTCTTTTTTTTTTGTAGCTTCCCCTGTTTTATACTCTGTTTTTATGTTATTTGTATGCAGGGGATTC
CCTGTTTGGCTAAAATATGTGCCTGGTATGGAATTTAGAACAAACAATCAGCCTTTTAAGGTTTTTTTTTTTCCAACTTT
CCATTCGTCTTAAAGTTTGAGTTGTTAGAAAGAGCACAACGTCTCTCTTTGCATGCATGTTAATTCTTTTTTATGAGCTA
TATCATATTGAAATATGTCAGAAAGTACACTTATTTGTTATAGTATATCATGTAACAACGACTCTTCACGTGTGGGGTTA
ATTCTTATTTCTGACTACTTGTTTGTTATGATATCATATTCAAATGTACGACAACCTCATCTAAAGTGACTATATGTTTT
AAGTTAATGTACTTAATTATATCATGTCACAACGACTCTTCACGTGTGGGGTTAATTCTTTTTATAGCCGAAACATGTGG
ACATGTTTTATGTATTTTGAGTGGCGGGGTCAGAGTTTTACCTAGTATCTCTGTTGAAATGTGTGACTATCTCGTTTATT
GAATTATTAGAGAAAATTACATAATTTTTTTTATTAATATTGAGTCTGAACTGTCATGTTTCTGGTTGACTATAATAAAA
GGTGGCTATGCAAGGATTTGTTCAGAAAATAGTCAACATGATGAAGTCAGAAAATTTGTTTGAATCTCAAGGAGGACCAA
TAATTATGGCCCAGGTTTGCATTATGATCATGCCTTGTCTTTACACTATTTATAGAAATGAATTTGGAATTTTTTGTCTC
AGTTTTCCCCCCTAATTCTTGATTAAGGGAGTCGAGCGTTGTTTAGTTTTTTTTGTTTCGTTTATCATACTTATTTGTGG
TTGCTACTGTTCTTTTCTCTTCCTTGAAATGTTGTTTAGTTCCCTAATTCGTGATTAAGGTAGTCGGATGTTGTTTAGTT
TTCCTGTAGTATTATTAGTAATTCCCCTACTATTTGTGGTTGCTACTGCTCTTTTTTCTCCTCTTAATTAATTGTTGTTT
TGTTCACTGATTCTTGATTAAGGTAGTCGAACGTTGTTTAGTTTTTCCCTTAATCCTTATCAGTAGTATTATAAGCCATT
CTCCTACTATCGTACTCTTCGTTGTGTCTTTGCTTTGTTTATCAAACTATTTGTGGTTGCTACTGTTTTTTTCTCCATCA
TTTTCTACAAGTTTCATTTGAGCCAGGGGTCAATCGGAAACAACCTCTCTACCTTCACAAGGTCGGGATACGACTACGTA
CACCCTACTTGTGGAGTTAAACTGGCTATGATGTTGATGTTGTTGTTGTTGCAGATAGAAAATGAGTATGGACCAGTAGA
ATGGGAAATTGGTGCTCCTGGTAAAGCTTATACAAAATGGGCAGCTCAAATGGCTGTAGGTTTGAAAACTGGTGTCCCAT
GGATCATGTGTAAGCAAGAGGATGCTCCTGATCCTGTGGTAAGCAATTTGATATAGGACTTGTTTCAAGGTTCATTTTAG
ACATCTCATATTGTCTTGATTGTGCTACAGATTGATACTTGTAATGGCTTCTACTGCGAAGGGTTCCGTCCTAATAAGCC
TTACAAACCTAAAATGTGGACAGAAGTATGGACTGGCTGGTAAGTATCAAGAACGCGAATTACATGATTCTAATGCAGTT
TATGTTCTTCTGAGTTGGTTTCTTCATTCAACTACTCTATTTAGTCGAATGTTCGTTAATGATATACTCTCTACTATGCT
CAGGTATACGAAATTCGGTGGTCCAATTCCTCAAAGACCAGCCGAAGACATTGCATTTTCAGTTGCCAGGTTTGTTCAGA
ACAATGGTTCATTCTTCAATTACTACATGGTAAGTTAGAACATCTGGTTCCGTGTTCAAGTTTTTCTCGTTAAACATGGC
TATTGTATTGATGTACTGTGGTTGCTTCAGTATCATGGAGGAACAAATTTTGGCCGGACATCATCAGGGCTTTTCATTGC
AACTAGCTACGATTATGATGCTCCTCTCGATGAATATGGTACGAAACAAGAACTAGTATTCTTCTTGTATCTCCACATCT
GCATAACACAGAACGGAAATAATGGAAAATTTCCTAAAAATTATTCATGCTTGTCTTGATGATTTGCGTTATGGTGTAAA
AGGGTTGCTGAATGAACCAAAGTATGGGCACTTGAGAGACTTACATAAAGCTATCAAGCTATCTGAACCGGCTTTAGTTT
CATCATATGCTGCGGTGACTAGTCTTGGAAGTAATCAAGAGGTTAGTCTGTTTTTTTTCCCTTTGAGTCGAGGGTCTATT
GGAAGCAGCCTCTCTATCTTTAAGGTAGGGGAAAGGTTTATGTATACTCTATCCTCTCCAGATCCCACTATGTGAGACTA
CACTCGATATGTTGTTGTAATTGTCGTGATTTTTCTTCTAACGCTGTTTACATTTTTTTTGACCAATATAGGCTCATGTT
TATAGATCAAAATCTGGAGCTTGTGCTGCTTTTTTATCCAACTATGACTCTAGATATTCAGTAAAAGTCACCTTTCAGAA
TAGGCCATACAATCTGCCTCCATGGTCCATCAGCATTCTTCCCGACTGCAAAACTGCCGTTTACAACACTGCACAGGTAT
AGTTTAAATAAATAAATACCGTCAGTCCTCTCTATAACCGTCATTCTCTATAGCAACATTTCTCTGTCATAGTCTATGTC
ATTTGTGGAACCGATCTTTCATGTTAATGCTATATTATATGTTTTCTATAACAACACTTTGCTATAGCAGCCCAAAAGTA
CTGAAACAAATGATGTTGTAATGAGGCAGTTATAGAGAGGTTTGACTGTATAAGCATTTGGGCCAGAAGTTTTAATGTCT
GCTTGTGTAATGCTGCAGGTTAACTCTCAAAGCTCGAGCATAAAGATGACGCCTGCAGGTGGTGGATTGTCTTGGCAGTC
ATACAATGAAGAAACGCCTACTGCTGATGACAGCGATACACTTACAGCTAACGGACTATGGGAACAGAAAAACGTCACAA
GAGATTCATCAGACTATCTGTGGTACATGACAAAGTGAGTAACTTACATTTTCCTACTTTTTTCGAATGATTATATTTAG
TTCCGTCTTCACTCACACATATCTATATCTAATATCATAATGACTTTTTTTGTTACTTTTTCCAGTGTAAATATAGCATC
TAATGAAGGATTTCTAAAGAACGGAAAGGATCCTTATCTCACTGTTATGTCCGCTGGTCATGTCTTGCATGTTTTCGTCA
ATGGAAAACTATCAGGTAGCGGAAACAACACTATTTTGGGATTATGGCAAATGCTTTTCCCTAACAGACTACTTCTCTCA
GTTCCAATTTGTCTGACTTGACACGAAATTTAAGAAAGTAAAGTTTGAATCTTGTGGCCTTAAACATGTCACGTGGAGTA
GAGAACAAAGAGTTGCCCTAAAAAAAGAAAAGAGACATTCTTTTTGAAACGGACTAGAAAGGGATAGTAAAACAAACAAA
TTGAAACGGACAGAGTACATCTTTTGACGTCTATTCCTGTTTTCCTAACATCTCTTTGTCCTTGAATTGTTGTAGGAACT
GTTTATGGTACATTGGATAATCCAAAACTTACATACAGTGGCAACGTGAAGTTAAGAGCTGGTATTAACAAGATTTCTCT
GCTCAGTGTTTCCGTTGGTCTCCCGGTTAGTTTTCTATTTCCTGTTTCTCCGATCCTTTATTAGCACCGATAACCAAACC
TTTAAAAAAAAATATAACCTATGGTTTTAACTACATTTCAGAACGTTGGCGTGCATTATGATACATGGAATGCAGGAGTT
CTAGGTCCAGTCACGTTGAGCGGTCTCAATGAAGGGTCAAGAAACTTGGCGAAACAGAAATGGTCTTACAAGGTATGTTA
ACTAACTAATTGCTTCTCTTCTCCCCCTAAAGCCTGATCTTCGTATAACTTTGATATGCTTTTCCTTGAGCCGAGGGTCT
ACCGGAAACAACCTCTCTACCTCCCAAGACCTTACCTGTGGGATTACACTGCATATGTTGTTGTTGATACCTGAATAGTC
TATACTTTGCTTGTTCATAGGTTGGTCTGAAAGGCGAATCGTTAAGTCTTCACTCCTTAAGTGGGAGTTCTTCTGTTGAA
TGGGTTCGAGGTTCACTAGTGGCTCAAAAGCAGCCCCTGACTTGGTACAAGGTAAATTCCTACTGGTATAACATCAACAA
ACTACATATCAACACGTGTTTATCGATTATATGAAGTTGAATAGCGTGTAACACATAGTTAACAGACTAACATACGTTTT
CCAGGCTACATTTAACGCGCCTGGAGGAAATGATCCACTAGCTTTAGACATGGCAAGTATGGGAAAAGGTCAGATATGGA
TAAATGGTGAAGGCGTAGGTCGCCATTGGCCTGGATACATAGCACAAGGCGACTGCAGCAAATGCAGTTATGCTGGAACG
TTCAACGAGAAGAAGTGCCAGACTAACTGCGGACAACCTTCTCAGAGATGGTAAGCACATTTCCAACAACCTTTAACGGA
GTTATAGGATCACATGAGGTAGAACTACAGTCTGTATGCACTCTACCTTCCCTAGACCTCATTCTGCGGGAATACACTGA
GTATGTTGTTGTTGTTCCATAGGATCACACAGACGAACAAAACGCAACATGTTTGAAGAAATGTGATACTTTTTTTTACC
TTCAACTTGCATTAAGATACTTCGCGAACTTGTAAATTTCAGGTACCATGTTCCACGATCGTGGCTGAAACCAAGTGGAA
ACTTGTTAGTAGTATTCGAAGAATGGGGAGGTAATCCAACAGGAATTTCTCTAGTCAGGAGATCAAGATAA
ATGCTAAGGACTAATGTGTTGTTGTTATTAGTTATTTGTTTATTGGATTTTTTTTCTTCAGTGAAAGCTAGTGTTTCTTA
TGATGACAGAGCTATAATCATAAATGGGAAAAGAAAAATTCTTATTTCTGGTTCAATTCATTATCCAAGAAGCACTCCAC
AGGTAAATTATATACAAAAAAAATTGTATTATTTCATTATTTTCTTGTTTTTGGTTGTAAAGATCATTTCTTTACACTTT
GTTATGGATTGTGTGAAATGGGTGTGCTTTGTATTTCTGTAATTCTTGTTTTTTTAAGAATTTTGGTTGTAAAAATGTGA
ACTTTATGCTTTTTTATGGCTTCTGTCAAAAGGGTCTGTTTTGTTTTTCTGTAATTTTTTAAGTTTCTTCTTTATACATT
TTAATGGATTCTTAGAAATGGGTGTATCATGTTTTTGTGTAATTCTTGTTTTTTTTTAAAAGCATTTTGGTTCTAAAAAT
GCAAACTTTATGCTTTTTTTTATAGCTTCTGTAAAAAGGGTGTGTTTTGTTTTTCTGTAATTTTTTAAGTTTCTAAAAAT
CTTTTCTTTATACATTTTTATGGATTCTGTGAAATGGGTTTATCTTGTTTTTCTGTAATACTTGTTTAGTTATGATTTTT
AGTTCTAAAAGTATGAACTTTACACTTGTTTTTCTGTTTATTTAATGTTTTTGGTTCTAAAAATCTTTTCTTTACCCCTT
TCTTATAAACCTATGCGATTATGCTGAGTATGTTATTATTGTTGTTTTGCGTTACTTAAGTCAAAGGTATGTAGGAAACA
AAAGGTAAAAAGACCCTGCTTATGGAATTGTACTGGATATGTCGTTGTTATTATTATTGTTGTTTGTGTTAGTTGAGTCG
AGGGTCTATCGAAGTTATCCTCTCTATCTTCACTTATGTACACGCCACACTTCCTAAACTCCGCTTATGAAATTACACTG
TGTATATTTTTGTTGTTATTATTTGTATTGTTATTTAATTTTTGATTGTAAAAATCTCAAACTTTACATTTTTATGCTCT
ACTTTTTTTGAAACTCTAATATATTGTCATTTTTTTTTCTATTGGTGATTTTAGATGTGGCCTGATCTTATACAAAAGGC
TAAAGATGGAGGCTTAGATGTTATTGAAACTTATGTTTTCTGGAATGGACATGAGCCTTCTCCTGGAAAAGTAATGTCTT
TTTTTTCTTAATTTTTTTTCTTGAATTTATATCATGATTCTGCAATTTAATATCCAAAATGAATTAAAAAAAATTTCATA
TTTTTTTTTTTGAATTTTCAGTATAATTTTGAAGGAAGATATGATCTTGTTAGATTCATCAAAATGGTACAAAGAGCAGG
ACTTTATGTCAATTTACGTATTGGCCCTTACGTCTGTGCTGAATGGAACTTTGGGTATGTTTACTAAAGATACACGGAGT
TCAAGAAAATGACTTTTTTTTTTGAATTTTATTATTTTAAACTAAAAATATGCAAAATATATTAAAATGCTGTTTAATCT
TGTTATGTCAAACATGAAAAAAGTTGATTCTTTTTTAAACGAAAAGTAAGACGAATAAATTAAAACGAAAGGAGTAAAAG
GATTGGCTTTAGTGTCTTTTTTTTTTGTAGCTTCCCCTGTTTTATACTCTGTTTTTATGTTATTTGTATGCAGGGGATTC
CCTGTTTGGCTAAAATATGTGCCTGGTATGGAATTTAGAACAAACAATCAGCCTTTTAAGGTTTTTTTTTTTCCAACTTT
CCATTCGTCTTAAAGTTTGAGTTGTTAGAAAGAGCACAACGTCTCTCTTTGCATGCATGTTAATTCTTTTTTATGAGCTA
TATCATATTGAAATATGTCAGAAAGTACACTTATTTGTTATAGTATATCATGTAACAACGACTCTTCACGTGTGGGGTTA
ATTCTTATTTCTGACTACTTGTTTGTTATGATATCATATTCAAATGTACGACAACCTCATCTAAAGTGACTATATGTTTT
AAGTTAATGTACTTAATTATATCATGTCACAACGACTCTTCACGTGTGGGGTTAATTCTTTTTATAGCCGAAACATGTGG
ACATGTTTTATGTATTTTGAGTGGCGGGGTCAGAGTTTTACCTAGTATCTCTGTTGAAATGTGTGACTATCTCGTTTATT
GAATTATTAGAGAAAATTACATAATTTTTTTTATTAATATTGAGTCTGAACTGTCATGTTTCTGGTTGACTATAATAAAA
GGTGGCTATGCAAGGATTTGTTCAGAAAATAGTCAACATGATGAAGTCAGAAAATTTGTTTGAATCTCAAGGAGGACCAA
TAATTATGGCCCAGGTTTGCATTATGATCATGCCTTGTCTTTACACTATTTATAGAAATGAATTTGGAATTTTTTGTCTC
AGTTTTCCCCCCTAATTCTTGATTAAGGGAGTCGAGCGTTGTTTAGTTTTTTTTGTTTCGTTTATCATACTTATTTGTGG
TTGCTACTGTTCTTTTCTCTTCCTTGAAATGTTGTTTAGTTCCCTAATTCGTGATTAAGGTAGTCGGATGTTGTTTAGTT
TTCCTGTAGTATTATTAGTAATTCCCCTACTATTTGTGGTTGCTACTGCTCTTTTTTCTCCTCTTAATTAATTGTTGTTT
TGTTCACTGATTCTTGATTAAGGTAGTCGAACGTTGTTTAGTTTTTCCCTTAATCCTTATCAGTAGTATTATAAGCCATT
CTCCTACTATCGTACTCTTCGTTGTGTCTTTGCTTTGTTTATCAAACTATTTGTGGTTGCTACTGTTTTTTTCTCCATCA
TTTTCTACAAGTTTCATTTGAGCCAGGGGTCAATCGGAAACAACCTCTCTACCTTCACAAGGTCGGGATACGACTACGTA
CACCCTACTTGTGGAGTTAAACTGGCTATGATGTTGATGTTGTTGTTGTTGCAGATAGAAAATGAGTATGGACCAGTAGA
ATGGGAAATTGGTGCTCCTGGTAAAGCTTATACAAAATGGGCAGCTCAAATGGCTGTAGGTTTGAAAACTGGTGTCCCAT
GGATCATGTGTAAGCAAGAGGATGCTCCTGATCCTGTGGTAAGCAATTTGATATAGGACTTGTTTCAAGGTTCATTTTAG
ACATCTCATATTGTCTTGATTGTGCTACAGATTGATACTTGTAATGGCTTCTACTGCGAAGGGTTCCGTCCTAATAAGCC
TTACAAACCTAAAATGTGGACAGAAGTATGGACTGGCTGGTAAGTATCAAGAACGCGAATTACATGATTCTAATGCAGTT
TATGTTCTTCTGAGTTGGTTTCTTCATTCAACTACTCTATTTAGTCGAATGTTCGTTAATGATATACTCTCTACTATGCT
CAGGTATACGAAATTCGGTGGTCCAATTCCTCAAAGACCAGCCGAAGACATTGCATTTTCAGTTGCCAGGTTTGTTCAGA
ACAATGGTTCATTCTTCAATTACTACATGGTAAGTTAGAACATCTGGTTCCGTGTTCAAGTTTTTCTCGTTAAACATGGC
TATTGTATTGATGTACTGTGGTTGCTTCAGTATCATGGAGGAACAAATTTTGGCCGGACATCATCAGGGCTTTTCATTGC
AACTAGCTACGATTATGATGCTCCTCTCGATGAATATGGTACGAAACAAGAACTAGTATTCTTCTTGTATCTCCACATCT
GCATAACACAGAACGGAAATAATGGAAAATTTCCTAAAAATTATTCATGCTTGTCTTGATGATTTGCGTTATGGTGTAAA
AGGGTTGCTGAATGAACCAAAGTATGGGCACTTGAGAGACTTACATAAAGCTATCAAGCTATCTGAACCGGCTTTAGTTT
CATCATATGCTGCGGTGACTAGTCTTGGAAGTAATCAAGAGGTTAGTCTGTTTTTTTTCCCTTTGAGTCGAGGGTCTATT
GGAAGCAGCCTCTCTATCTTTAAGGTAGGGGAAAGGTTTATGTATACTCTATCCTCTCCAGATCCCACTATGTGAGACTA
CACTCGATATGTTGTTGTAATTGTCGTGATTTTTCTTCTAACGCTGTTTACATTTTTTTTGACCAATATAGGCTCATGTT
TATAGATCAAAATCTGGAGCTTGTGCTGCTTTTTTATCCAACTATGACTCTAGATATTCAGTAAAAGTCACCTTTCAGAA
TAGGCCATACAATCTGCCTCCATGGTCCATCAGCATTCTTCCCGACTGCAAAACTGCCGTTTACAACACTGCACAGGTAT
AGTTTAAATAAATAAATACCGTCAGTCCTCTCTATAACCGTCATTCTCTATAGCAACATTTCTCTGTCATAGTCTATGTC
ATTTGTGGAACCGATCTTTCATGTTAATGCTATATTATATGTTTTCTATAACAACACTTTGCTATAGCAGCCCAAAAGTA
CTGAAACAAATGATGTTGTAATGAGGCAGTTATAGAGAGGTTTGACTGTATAAGCATTTGGGCCAGAAGTTTTAATGTCT
GCTTGTGTAATGCTGCAGGTTAACTCTCAAAGCTCGAGCATAAAGATGACGCCTGCAGGTGGTGGATTGTCTTGGCAGTC
ATACAATGAAGAAACGCCTACTGCTGATGACAGCGATACACTTACAGCTAACGGACTATGGGAACAGAAAAACGTCACAA
GAGATTCATCAGACTATCTGTGGTACATGACAAAGTGAGTAACTTACATTTTCCTACTTTTTTCGAATGATTATATTTAG
TTCCGTCTTCACTCACACATATCTATATCTAATATCATAATGACTTTTTTTGTTACTTTTTCCAGTGTAAATATAGCATC
TAATGAAGGATTTCTAAAGAACGGAAAGGATCCTTATCTCACTGTTATGTCCGCTGGTCATGTCTTGCATGTTTTCGTCA
ATGGAAAACTATCAGGTAGCGGAAACAACACTATTTTGGGATTATGGCAAATGCTTTTCCCTAACAGACTACTTCTCTCA
GTTCCAATTTGTCTGACTTGACACGAAATTTAAGAAAGTAAAGTTTGAATCTTGTGGCCTTAAACATGTCACGTGGAGTA
GAGAACAAAGAGTTGCCCTAAAAAAAGAAAAGAGACATTCTTTTTGAAACGGACTAGAAAGGGATAGTAAAACAAACAAA
TTGAAACGGACAGAGTACATCTTTTGACGTCTATTCCTGTTTTCCTAACATCTCTTTGTCCTTGAATTGTTGTAGGAACT
GTTTATGGTACATTGGATAATCCAAAACTTACATACAGTGGCAACGTGAAGTTAAGAGCTGGTATTAACAAGATTTCTCT
GCTCAGTGTTTCCGTTGGTCTCCCGGTTAGTTTTCTATTTCCTGTTTCTCCGATCCTTTATTAGCACCGATAACCAAACC
TTTAAAAAAAAATATAACCTATGGTTTTAACTACATTTCAGAACGTTGGCGTGCATTATGATACATGGAATGCAGGAGTT
CTAGGTCCAGTCACGTTGAGCGGTCTCAATGAAGGGTCAAGAAACTTGGCGAAACAGAAATGGTCTTACAAGGTATGTTA
ACTAACTAATTGCTTCTCTTCTCCCCCTAAAGCCTGATCTTCGTATAACTTTGATATGCTTTTCCTTGAGCCGAGGGTCT
ACCGGAAACAACCTCTCTACCTCCCAAGACCTTACCTGTGGGATTACACTGCATATGTTGTTGTTGATACCTGAATAGTC
TATACTTTGCTTGTTCATAGGTTGGTCTGAAAGGCGAATCGTTAAGTCTTCACTCCTTAAGTGGGAGTTCTTCTGTTGAA
TGGGTTCGAGGTTCACTAGTGGCTCAAAAGCAGCCCCTGACTTGGTACAAGGTAAATTCCTACTGGTATAACATCAACAA
ACTACATATCAACACGTGTTTATCGATTATATGAAGTTGAATAGCGTGTAACACATAGTTAACAGACTAACATACGTTTT
CCAGGCTACATTTAACGCGCCTGGAGGAAATGATCCACTAGCTTTAGACATGGCAAGTATGGGAAAAGGTCAGATATGGA
TAAATGGTGAAGGCGTAGGTCGCCATTGGCCTGGATACATAGCACAAGGCGACTGCAGCAAATGCAGTTATGCTGGAACG
TTCAACGAGAAGAAGTGCCAGACTAACTGCGGACAACCTTCTCAGAGATGGTAAGCACATTTCCAACAACCTTTAACGGA
GTTATAGGATCACATGAGGTAGAACTACAGTCTGTATGCACTCTACCTTCCCTAGACCTCATTCTGCGGGAATACACTGA
GTATGTTGTTGTTGTTCCATAGGATCACACAGACGAACAAAACGCAACATGTTTGAAGAAATGTGATACTTTTTTTTACC
TTCAACTTGCATTAAGATACTTCGCGAACTTGTAAATTTCAGGTACCATGTTCCACGATCGTGGCTGAAACCAAGTGGAA
ACTTGTTAGTAGTATTCGAAGAATGGGGAGGTAATCCAACAGGAATTTCTCTAGTCAGGAGATCAAGATAA
Download sequence region |
Get flanking sequences on SL2.50ch12
|
![]() ![]() |
![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc12g008840.1.1 Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35
ATGCTAAGGACTAATGTGTTGTTGTTATTAGTTATTTGTTTATTGGATTTTTTTTCTTCAGTGAAAGCTAGTGTTTCTTA
TGATGACAGAGCTATAATCATAAATGGGAAAAGAAAAATTCTTATTTCTGGTTCAATTCATTATCCAAGAAGCACTCCAC
AGATGTGGCCTGATCTTATACAAAAGGCTAAAGATGGAGGCTTAGATGTTATTGAAACTTATGTTTTCTGGAATGGACAT
GAGCCTTCTCCTGGAAAATATAATTTTGAAGGAAGATATGATCTTGTTAGATTCATCAAAATGGTACAAAGAGCAGGACT
TTATGTCAATTTACGTATTGGCCCTTACGTCTGTGCTGAATGGAACTTTGGGGGATTCCCTGTTTGGCTAAAATATGTGC
CTGGTATGGAATTTAGAACAAACAATCAGCCTTTTAAGGTGGCTATGCAAGGATTTGTTCAGAAAATAGTCAACATGATG
AAGTCAGAAAATTTGTTTGAATCTCAAGGAGGACCAATAATTATGGCCCAGATAGAAAATGAGTATGGACCAGTAGAATG
GGAAATTGGTGCTCCTGGTAAAGCTTATACAAAATGGGCAGCTCAAATGGCTGTAGGTTTGAAAACTGGTGTCCCATGGA
TCATGTGTAAGCAAGAGGATGCTCCTGATCCTGTGATTGATACTTGTAATGGCTTCTACTGCGAAGGGTTCCGTCCTAAT
AAGCCTTACAAACCTAAAATGTGGACAGAAGTATGGACTGGCTGGTATACGAAATTCGGTGGTCCAATTCCTCAAAGACC
AGCCGAAGACATTGCATTTTCAGTTGCCAGGTTTGTTCAGAACAATGGTTCATTCTTCAATTACTACATGTATCATGGAG
GAACAAATTTTGGCCGGACATCATCAGGGCTTTTCATTGCAACTAGCTACGATTATGATGCTCCTCTCGATGAATATGGG
TTGCTGAATGAACCAAAGTATGGGCACTTGAGAGACTTACATAAAGCTATCAAGCTATCTGAACCGGCTTTAGTTTCATC
ATATGCTGCGGTGACTAGTCTTGGAAGTAATCAAGAGGCTCATGTTTATAGATCAAAATCTGGAGCTTGTGCTGCTTTTT
TATCCAACTATGACTCTAGATATTCAGTAAAAGTCACCTTTCAGAATAGGCCATACAATCTGCCTCCATGGTCCATCAGC
ATTCTTCCCGACTGCAAAACTGCCGTTTACAACACTGCACAGGTTAACTCTCAAAGCTCGAGCATAAAGATGACGCCTGC
AGGTGGTGGATTGTCTTGGCAGTCATACAATGAAGAAACGCCTACTGCTGATGACAGCGATACACTTACAGCTAACGGAC
TATGGGAACAGAAAAACGTCACAAGAGATTCATCAGACTATCTGTGGTACATGACAAATGTAAATATAGCATCTAATGAA
GGATTTCTAAAGAACGGAAAGGATCCTTATCTCACTGTTATGTCCGCTGGTCATGTCTTGCATGTTTTCGTCAATGGAAA
ACTATCAGGAACTGTTTATGGTACATTGGATAATCCAAAACTTACATACAGTGGCAACGTGAAGTTAAGAGCTGGTATTA
ACAAGATTTCTCTGCTCAGTGTTTCCGTTGGTCTCCCGAACGTTGGCGTGCATTATGATACATGGAATGCAGGAGTTCTA
GGTCCAGTCACGTTGAGCGGTCTCAATGAAGGGTCAAGAAACTTGGCGAAACAGAAATGGTCTTACAAGGTTGGTCTGAA
AGGCGAATCGTTAAGTCTTCACTCCTTAAGTGGGAGTTCTTCTGTTGAATGGGTTCGAGGTTCACTAGTGGCTCAAAAGC
AGCCCCTGACTTGGTACAAGGCTACATTTAACGCGCCTGGAGGAAATGATCCACTAGCTTTAGACATGGCAAGTATGGGA
AAAGGTCAGATATGGATAAATGGTGAAGGCGTAGGTCGCCATTGGCCTGGATACATAGCACAAGGCGACTGCAGCAAATG
CAGTTATGCTGGAACGTTCAACGAGAAGAAGTGCCAGACTAACTGCGGACAACCTTCTCAGAGATGGTACCATGTTCCAC
GATCGTGGCTGAAACCAAGTGGAAACTTGTTAGTAGTATTCGAAGAATGGGGAGGTAATCCAACAGGAATTTCTCTAGTC
AGGAGATCAAGATAA
ATGCTAAGGACTAATGTGTTGTTGTTATTAGTTATTTGTTTATTGGATTTTTTTTCTTCAGTGAAAGCTAGTGTTTCTTA
TGATGACAGAGCTATAATCATAAATGGGAAAAGAAAAATTCTTATTTCTGGTTCAATTCATTATCCAAGAAGCACTCCAC
AGATGTGGCCTGATCTTATACAAAAGGCTAAAGATGGAGGCTTAGATGTTATTGAAACTTATGTTTTCTGGAATGGACAT
GAGCCTTCTCCTGGAAAATATAATTTTGAAGGAAGATATGATCTTGTTAGATTCATCAAAATGGTACAAAGAGCAGGACT
TTATGTCAATTTACGTATTGGCCCTTACGTCTGTGCTGAATGGAACTTTGGGGGATTCCCTGTTTGGCTAAAATATGTGC
CTGGTATGGAATTTAGAACAAACAATCAGCCTTTTAAGGTGGCTATGCAAGGATTTGTTCAGAAAATAGTCAACATGATG
AAGTCAGAAAATTTGTTTGAATCTCAAGGAGGACCAATAATTATGGCCCAGATAGAAAATGAGTATGGACCAGTAGAATG
GGAAATTGGTGCTCCTGGTAAAGCTTATACAAAATGGGCAGCTCAAATGGCTGTAGGTTTGAAAACTGGTGTCCCATGGA
TCATGTGTAAGCAAGAGGATGCTCCTGATCCTGTGATTGATACTTGTAATGGCTTCTACTGCGAAGGGTTCCGTCCTAAT
AAGCCTTACAAACCTAAAATGTGGACAGAAGTATGGACTGGCTGGTATACGAAATTCGGTGGTCCAATTCCTCAAAGACC
AGCCGAAGACATTGCATTTTCAGTTGCCAGGTTTGTTCAGAACAATGGTTCATTCTTCAATTACTACATGTATCATGGAG
GAACAAATTTTGGCCGGACATCATCAGGGCTTTTCATTGCAACTAGCTACGATTATGATGCTCCTCTCGATGAATATGGG
TTGCTGAATGAACCAAAGTATGGGCACTTGAGAGACTTACATAAAGCTATCAAGCTATCTGAACCGGCTTTAGTTTCATC
ATATGCTGCGGTGACTAGTCTTGGAAGTAATCAAGAGGCTCATGTTTATAGATCAAAATCTGGAGCTTGTGCTGCTTTTT
TATCCAACTATGACTCTAGATATTCAGTAAAAGTCACCTTTCAGAATAGGCCATACAATCTGCCTCCATGGTCCATCAGC
ATTCTTCCCGACTGCAAAACTGCCGTTTACAACACTGCACAGGTTAACTCTCAAAGCTCGAGCATAAAGATGACGCCTGC
AGGTGGTGGATTGTCTTGGCAGTCATACAATGAAGAAACGCCTACTGCTGATGACAGCGATACACTTACAGCTAACGGAC
TATGGGAACAGAAAAACGTCACAAGAGATTCATCAGACTATCTGTGGTACATGACAAATGTAAATATAGCATCTAATGAA
GGATTTCTAAAGAACGGAAAGGATCCTTATCTCACTGTTATGTCCGCTGGTCATGTCTTGCATGTTTTCGTCAATGGAAA
ACTATCAGGAACTGTTTATGGTACATTGGATAATCCAAAACTTACATACAGTGGCAACGTGAAGTTAAGAGCTGGTATTA
ACAAGATTTCTCTGCTCAGTGTTTCCGTTGGTCTCCCGAACGTTGGCGTGCATTATGATACATGGAATGCAGGAGTTCTA
GGTCCAGTCACGTTGAGCGGTCTCAATGAAGGGTCAAGAAACTTGGCGAAACAGAAATGGTCTTACAAGGTTGGTCTGAA
AGGCGAATCGTTAAGTCTTCACTCCTTAAGTGGGAGTTCTTCTGTTGAATGGGTTCGAGGTTCACTAGTGGCTCAAAAGC
AGCCCCTGACTTGGTACAAGGCTACATTTAACGCGCCTGGAGGAAATGATCCACTAGCTTTAGACATGGCAAGTATGGGA
AAAGGTCAGATATGGATAAATGGTGAAGGCGTAGGTCGCCATTGGCCTGGATACATAGCACAAGGCGACTGCAGCAAATG
CAGTTATGCTGGAACGTTCAACGAGAAGAAGTGCCAGACTAACTGCGGACAACCTTCTCAGAGATGGTACCATGTTCCAC
GATCGTGGCTGAAACCAAGTGGAAACTTGTTAGTAGTATTCGAAGAATGGGGAGGTAATCCAACAGGAATTTCTCTAGTC
AGGAGATCAAGATAA
![]() ![]() | translated polypeptide sequence |
>Solyc12g008840.1.1 Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35
MLRTNVLLLLVICLLDFFSSVKASVSYDDRAIIINGKRKILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIETYVFWNGH
EPSPGKYNFEGRYDLVRFIKMVQRAGLYVNLRIGPYVCAEWNFGGFPVWLKYVPGMEFRTNNQPFKVAMQGFVQKIVNMM
KSENLFESQGGPIIMAQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLKTGVPWIMCKQEDAPDPVIDTCNGFYCEGFRPN
KPYKPKMWTEVWTGWYTKFGGPIPQRPAEDIAFSVARFVQNNGSFFNYYMYHGGTNFGRTSSGLFIATSYDYDAPLDEYG
LLNEPKYGHLRDLHKAIKLSEPALVSSYAAVTSLGSNQEAHVYRSKSGACAAFLSNYDSRYSVKVTFQNRPYNLPPWSIS
ILPDCKTAVYNTAQVNSQSSSIKMTPAGGGLSWQSYNEETPTADDSDTLTANGLWEQKNVTRDSSDYLWYMTNVNIASNE
GFLKNGKDPYLTVMSAGHVLHVFVNGKLSGTVYGTLDNPKLTYSGNVKLRAGINKISLLSVSVGLPNVGVHYDTWNAGVL
GPVTLSGLNEGSRNLAKQKWSYKVGLKGESLSLHSLSGSSSVEWVRGSLVAQKQPLTWYKATFNAPGGNDPLALDMASMG
KGQIWINGEGVGRHWPGYIAQGDCSKCSYAGTFNEKKCQTNCGQPSQRWYHVPRSWLKPSGNLLVVFEEWGGNPTGISLV
RRSR*
MLRTNVLLLLVICLLDFFSSVKASVSYDDRAIIINGKRKILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIETYVFWNGH
EPSPGKYNFEGRYDLVRFIKMVQRAGLYVNLRIGPYVCAEWNFGGFPVWLKYVPGMEFRTNNQPFKVAMQGFVQKIVNMM
KSENLFESQGGPIIMAQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLKTGVPWIMCKQEDAPDPVIDTCNGFYCEGFRPN
KPYKPKMWTEVWTGWYTKFGGPIPQRPAEDIAFSVARFVQNNGSFFNYYMYHGGTNFGRTSSGLFIATSYDYDAPLDEYG
LLNEPKYGHLRDLHKAIKLSEPALVSSYAAVTSLGSNQEAHVYRSKSGACAAFLSNYDSRYSVKVTFQNRPYNLPPWSIS
ILPDCKTAVYNTAQVNSQSSSIKMTPAGGGLSWQSYNEETPTADDSDTLTANGLWEQKNVTRDSSDYLWYMTNVNIASNE
GFLKNGKDPYLTVMSAGHVLHVFVNGKLSGTVYGTLDNPKLTYSGNVKLRAGINKISLLSVSVGLPNVGVHYDTWNAGVL
GPVTLSGLNEGSRNLAKQKWSYKVGLKGESLSLHSLSGSSSVEWVRGSLVAQKQPLTWYKATFNAPGGNDPLALDMASMG
KGQIWINGEGVGRHWPGYIAQGDCSKCSYAGTFNEKKCQTNCGQPSQRWYHVPRSWLKPSGNLLVVFEEWGGNPTGISLV
RRSR*
![]() ![]() |
![]() ![]() | [Associate new unigene] |
Unigene ID:
SGN-U577194 Tomato 200607 -- build 2 -- 5 members [Remove] [Blast]
SGN-U577461 Tomato 200607 -- build 2 -- 62 members [Remove] [Blast]
SGN-U581248 Tomato 200607 -- build 2 -- 4 members [Remove] [Blast]
SGN-U577461 Tomato 200607 -- build 2 -- 62 members [Remove] [Blast]
SGN-U581248 Tomato 200607 -- build 2 -- 4 members [Remove] [Blast]
![]() ![]() | [Associate new genbank sequence] |
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
A gene coding for tomato fruit beta-galactosidase II is expressed during fruit ripening. Cloning, characterization, and expression pattern.
Plant physiology (1998)
Show / hide abstract
Show / hide abstract
beta-Galactosidases (EC 3.2.1.23) constitute a widespread family of enzymes characterized by their ability to hydrolyze terminal, nonreducing beta-D-galactosyl residues from beta-D-galactosides. Several beta-galactosidases, sometimes referred to as exo-galactanases, have been purified from plants and shown to possess in vitro activity against extracted cell wall material via the release of galactose from wall polymers containing beta(1-->4)-D-galactan. Although beta-galactosidase II, a protein present in tomato (Lycopersicon esculentum Mill.) fruit during ripening and capable of degrading tomato fruit galactan, has been purified, cloning of the corresponding gene has been elusive. We report here the cloning of a cDNA, pTombetagal 4 (accession no. AF020390), corresponding to beta-galactosidase II, and show that its corresponding gene is expressed during fruit ripening. Northern-blot analysis revealed that the beta-galactosidase II gene transcript was detectable at the breaker stage of ripeness, maximum at the turning stage, and present at decreasing levels during the later stages of normal tomato fruit ripening. At the turning stage of ripeness, the transcript was present in all fruit tissues and was highest in the outermost tissues (including the peel). Confirmation that pTombetagal 4 codes for beta-galactosidase II was derived from matching protein and deduced amino acid sequences. Furthermore, analysis of the deduced amino acid sequence of pTombetagal 4 suggested a high probability for secretion based on the presence of a hydrophobic leader sequence, a leader-sequence cleavage site, and three possible N-glycosylation sites. The predicted molecular mass and isoelectric point of the pTombetagal 4-encoded mature protein were similar to those reported for the purified beta-galactosidase II protein from tomato fruit.
Smith, DL. Starrett, DA. Gross, KC.
Plant physiology.
1998.
117(2).
417-23.
A family of at least seven beta-galactosidase genes is expressed during tomato fruit development.
Plant physiology (2000)
Show / hide abstract
Show / hide abstract
During our search for a cDNA encoding beta-galactosidase II, a beta-galactosidase/exogalactanase (EC 3.2.1.23) present during tomato (Lycopersicon esculentum Mill.) fruit ripening, a family of seven tomato beta-galactosidase (TBG) cDNAs was identified. The shared amino acid sequence identity among the seven TBG clones ranged from 33% to 79%. All contained the putative active site-containing consensus sequence pattern G-G-P-[LIVM]-x-Q-x-E-N-E-[FY] belonging to glycosyl hydrolase family 35. Six of the seven single-copy genes were mapped using restriction fragment length polymorphisms of recombinant inbred lines. RNA gel-blot analysis was used to evaluate TBG mRNA levels throughout fruit development, in different fruit tissues, and in various plant tissues. RNA gel-blot analysis was also used to reveal TBG mRNA levels in fruit of the rin, nor, and Nr tomato mutants. The TBG4-encoded protein, known to correspond to beta-galactosidase II, was expressed in yeast and exo-galactanase activity was confirmed via a quantified release of galactosyl residues from cell wall fractions containing beta(1-->4)-D-galactan purified from tomato fruit.
Smith, DL. Gross, KC.
Plant physiology.
2000.
123(3).
1173-83.
Down-regulation of a ripening-related beta-galactosidase gene (TBG1) in transgenic tomato fruits.
Journal of experimental botany (2001)
Show / hide abstract
Show / hide abstract
Exo-galactanase/beta-galactosidase (EC 3.2.1.23) activity is thought to be responsible for the loss of galactosyl residues from the cell walls of ripening tomatoes. Transgenic tomato plants (Lycopersicon esculentum Mill cv. Ailsa Craig) with reduced exo-galactanase/beta-galactosidase mRNA were generated to test this hypothesis and to investigate the role of the enzyme in fruit softening. A previously identified tomato beta-galactosidase cDNA clone, TBG1, was used in the experiments. Heterologous expression of the clone in yeast demonstrated that TBG1 could release galactosyl residues from tomato cell wall galactans. Transgenic plants showed a reduction in TBG1 mRNA to 10% of normal levels in the ripening fruits. However, despite the reduction in message, total beta-galactosidase and exo-galactanase activities were unaffected. Furthermore, there was no apparent effect on levels of cell wall galactosyl residues when compared with the control. It was concluded that during the ripening of tomato fruits a family of beta-galactosidases capable of degrading cell wall galactans are active and down-regulation of TBG1 message to 10% was insufficient to alter the degree of galactan degradation.
Carey, AT. Smith, DL. Harrison, E. Bird, CR. Gross, KC. Seymour, GB. Tucker, GA.
Journal of experimental botany.
2001.
52(357).
663-8.
Down-regulation of tomato beta-galactosidase 4 results in decreased fruit softening.
Plant physiology (2002)
Show / hide abstract
Show / hide abstract
Transcript abundance of the gene encoding beta-galactosidase II, a beta-galactosidase/exo-galactanase (EC 3.2.1.23) present during tomato (Lycopersicon esculentum) fruit ripening, was suppressed by expression of an antisense tomato beta-galactosidase 4 (TBG4) cDNA driven by the cauliflower mosaic virus 35S promoter. RNA gel-blot analysis was used to evaluate TBG4 mRNA levels in transgenic fruit. All of the antisense lines had attenuated TBG4 mRNA levels in turning stage fruit; however, TBG4 mRNA suppression was unstable, and mRNA levels varied in red-ripe fruit among the lines. Suppression of TBG4 mRNA levels in antisense fruit was correlated with a reduction in extractable exo-galactanase activity against a lupin galactan. All of the antisense lines had reduced free galactose levels at mature green stage 4, but levels comparable with controls during ripening. Total cell wall galactosyl contents in the antisense fruit were not significantly different from control fruit. Whole-fruit firmness was measured using a texture analyzer and the means of the peak force measurements for four of six antisense lines were significantly higher than control fruit. One antisense line had red-ripe fruit that were 40% firmer than controls. Fruit from this antisense line also had the lowest TBG4 mRNA and exo-galactanase levels and the highest wall galactosyl content during the early stages of ripening, implicating an involvement of this gene product in cell wall modification leading to fruit softening.
Smith, DL. Abbott, JA. Gross, KC.
Plant physiology.
2002.
129(4).
1755-62.
Antisense suppression of a beta-galactosidase gene (TB G6) in tomato increases fruit cracking.
Journal of experimental botany (2003)
Show / hide abstract
Show / hide abstract
Antisense suppression of a tomato beta-galactosidase gene (TBG6) was used to study its role in fruit development, cell wall-modification, and fruit firmness. TBG6 mRNA is highly abundant during the early stages of fruit development, but the levels decline sharply after the breaker stage with the start of the respiratory climacteric and a concomitant increase in ethylene production. Two antisense lines were obtained with significantly reduced levels of TBG6 mRNA at all stages of fruit development. At 30 d after pollination (dap), TBG6 mRNA levels were reduced by up to 98% and 88% in lines 6-2 and 6-10, respectively. Morphological phenotypes observed in the antisense lines included increased fruit cracking, reduced locular space, and a doubling in the thickness of the fruit cuticle. Two biochemical changes in antisense lines, compared with wild-type lines, were a reduction of exo-galactanase activity at the breaker +3 d stage and a reduction in the cell wall galactosyl content at the 20 dap stage. In addition, transgenic lines exhibited a 35-39% reduction in fruit firmness at the 20 dap stage, but their texture was equivalent to the wild type at 30 dap and beyond. Although the exact function of the TBG6 product is still unknown, these results implicate an important role for this enzyme in early fruit growth and development in tomato.
Moctezuma, E. Smith, DL. Gross, KC.
Journal of experimental botany.
2003.
54(390).
2025-33.
beta-Galactosidases in Ripening Tomatoes.
Plant physiology (1983)
Show / hide abstract
Show / hide abstract
Tomatoes (Lycopersicon esculentum L.) contained a high level of beta-galactosidase activity which was due to three forms of the enzyme. During tomato ripening, the sum of their activities remained relatively constant, but the levels of the individual forms of beta-galactosidase changed markedly. The three enzymes were separated by a combination of chromatography of DEAE-Sephadex A-50 and Sephadex G-100. During ripening of tomatoes, beta-galactosidases I and III levels decreased but the beta-galactosidase II level increased more than 3-fold. The three enzymes were optimally active near pH 4, and all were inhibited by galactose and galactonolactone. However, the enzymes differed in molecular weight, K(m) value with p-nitrophenyl-beta-galactoside, and stability with respect to pH and temperature. beta-Galactosidase II was the only enzyme capable of hydrolyzing a polysaccharide that was isolated from tomatoes and that consisted primarily of beta-1, 4-linked galactose. The ability of beta-galactosidase II to degrade the galactan and the increase in its activity during tomato ripening suggest a possible role for this enzyme in tomato softening.
Pressey, R.
Plant physiology.
1983.
71(1).
132-135.
![]() ![]() | [Add ontology annotations] |
biological_process
|
cellular_component
|
molecular_function
|
plant_anatomy
|
![]() ![]() |
- Genomic details
Please wait, checking for comments about locus 8215
Your Lists
Public Lists
List Contents
List Validation Report: Failed
Elements not found:
Optional: Add Missing Accessions to A List
Mismatched case
Click the Adjust Case button to align the case in the list with what is in the database.
Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
List elements matching a synonym
Multiple synonym matches
Fuzzy Search Results
Synonym Search Results
Available Seedlots
Your Datasets
Public Datasets
Dataset Contents
Dataset Validation Failed
Elements not found:
Your Calendar
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?
Add New Event
Event Info
Attribute | Value |
---|---|
Project Name: | |
Start Date: | |
End Date: | |
Event Type: | |
Event Description: | |
Event Web URL: |
Edit Event
Login
Forgot Username
If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.
Reset Password
To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.
Create New User
Working
