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Tomato locus mitogen-activated protein kinase 3
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Locus | Solyc06g005170 |
Locus name | mitogen-activated protein kinase 3 |
Symbol | mpk3 |
Gene activity | protein kinase |
Description | MAPK3 is a member of the Mitogen-activated protein kinase gene family of tomato. It plays an important role in mediating responses to biotic and abiotic stresses. |
Chromosome | 6 |
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Registry name: | None | [Associate registry name] |
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![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc06g005170.2 SL2.50ch06:192235..195321
ATGGTTGATGCTAATATGGGTGCTGCTCAATTTCCTGATTTTCCTAAAATTGTCACTCATGCTGGACAATATGTTCAGTA
TGACATTTTTGGTAATCTTTTTGAGATTACTAACAAGTATCAACCTCCTATCATGCCTATTGGACGTGGCGCTTATGGAA
TCGTCTGGTAATGTTAATTTTTCGACAAAGTTATGGATTCAGATCTAATATTTATTACATATAGACACTTACAAAATTTG
TGGTCTAAAATGAGATAAATGACAAGTTTGTTGTTCATCGTTACTCCATCCATTTGTACTAGTTGAAGTGTTTTAGTTTG
ATTGAATACGGGGTTTTAAGAGATTTTGATATTGTGATCCTAAATAGAAAGTTGGAACTGGAGGGTTAAAGCAAATGGAT
TGACATATTTAGTTTGTGTATTTGCAGACTGTTGAGTGACTAATTATGGTGTCTTATTTTGTGTGAAGCTCTGTGTTTAA
TGCGGAGCTGAATGAGATGGTTGCAGTTAAGAAAATCGCCAATGCTTTTGATAATTACATGGATGCTAAGAGGACGCTCC
GTGAAATTAAGCTTCTTCGCCATTTAGACCATGAAAACGTGAGTCTTCTTGTGTAACTTTTTCACTTTGGCTATTGCTTA
ACAGGCTACTACTGTTTCACTCTTTTCCATTAGTATCAGAATATGTATGTAGTAGTTGGGATTAACTAGTTATCTGTACA
GGAAAAGTGAGGCCAGTTAGGATTAGTATTGGACTGAAATGAACCAGAGTAGCGTGAATGAATATACAAGATTCATATAG
TTTGATCCCAACTGATCTCCCTCGTTGTAGTGGAATTTCCAAAAGCCGATAATAAACTATTCCTCTGGTTTTCAGCCATG
ATTTTCCGGTTGTACCTACAGTTGGACATAAAATTTTTACAATCACTATTACACTAAGAAAAATTATTATAGTACAAGTA
ATACATTTTGCTTATCAACGAAATCAAAAATGCTATGCAGGTCATTGGTTTAAGAGATGTGATTCCTCCGCCCTTACGAA
GGGAGTTTTCTGATGTTTACATTGCTACTGAACTCATGGATACTGATCTTCACCAAATAATTAGATCAAACCAAGGTTTA
TCAGAGGATCATTGCCAGGTAAACTCACCCCCTTCTCACCCAAATGCTTTCATGGATGCCGTCTTTATTGTTTTTCTAAA
AATTTTCAAAAATGTTACTTTTGCAGTACTTCATGTATCAGCTTCTCCGTGGGCTAAAGTACATACATTCCGCGCATGTT
ATTCATAGAGATCTCAAACCAAGTAACCTCTTGCTAAATGCAAATTGTGATCTTAAGATATGTGATTTTGGTCTTGCAAG
GCCAAACGTAGAGAACGAGAATATGACAGAATATGTAGTAACCAGATGGTACAGAGCACCGGAGCTTTTGTTGAACTCTT
CAGATTACACTGCTGCCATAGATGTTTGGTCTGTGGGTTGCATCTTCATGGAGCTTATGAATAGAAAACCTTTGTTTGCT
GGAAAAGATCATGTACATCAAATTCGCTTGCTAACTGAGGTAAAAACTGATTCATGAAAGATATATTTAACAGAATAGGG
TACACTTTTTTCATGTTTTTACGTGGAACGACGCTTTGCCATGTGGATTCTTGACGTGACATCATCTATTCGAGCTGTCT
CCGTCCAAACAACCATTAACATGAGCCTTTTTTCGACTGCATATAACAACTTAGCATACCTTTCTGAGTGATTTTTGTGA
GAAACAAATGCTCATTTCTTCGTTTATTTTTCTCAGCTTCTTGGCACTCCTACAGAATCTGATCTTAGCTTCCTCCGTAA
TGAAGATGCAAAAAGATACGTCAGGCAACTCCCACAACATCCACGCCAGCAGTTAGCAACAGTGTTCCCTCATGTGAATC
CATTAGCCATTGATCTTGTAGATAAGATGTTGACGCTCGACCCTACTAGAAGAATAACAGGTAGTTTTCCTATCTGCACT
GCTATTTAAGATAGACTGGAAAGCTTGAAAGATCAACAATTTGACTAAAACAACCTCTTTGTAATAAACATAGTATACCT
CTTTTCTTGAATGAATTCACACTTTTAACGCTATGGAGTCCATCTTGCCACCATATCTTCTTACTGAAACTTTCCCTTCT
TGCATTAGTGTAATAAGGGGAGCTAAAGCGACTGCAAATCCCTTTGGGAAGAAAGACTTAACATAATATCAAGTTAATTA
ATTTGTGATTAAAAAAAGAAGGGGTTGATTAAGAACAATAGACAGTCACTCCATCATGTTTATCATCACTATCTTTGGGA
AAGCTTGTCATTCTTTCCTCAGTAAAAAGAGTTCATTTTTGCATAAGCCTGCTCTTTAGCTCATTTTAACTCAAATAACT
TTTGAACAGGTCATTGACCTGCTTATTTATCAATTTACCCCCATTTGACACCCCTGAGCTACACTGAAGGAAGATTTTTG
CTGTAATGTTTTCGATTCATTTCTCTTTTAAGCTCATCGTGTGATATATTTGTGTTTGGTTGCAGTTGAGGAAGCATTAG
CTCATCCCTACCTCGCAAAGCTCCATGATGCAGCTGATGAACCAGTCTGCCCCATCCCGTTCTCTTTCGACTTTGAGCAA
CAAGGGATAGGAGAAGAGCAGATTAAAGACATGATTTATCAAGAAGCTTTGGCGTTGAATCCTGAATATGCTTAAGCATA
AGAGAAATCAGTTCTTCTCTTGCTTACCTAGTGTGGATTTTCTTGCTTGGACCAGCCCTCTCAAAGTTTTTGTTCACAGG
GTCAGTAGTAGTCCTTTGCAACTTTAATGTAAGGCAGCCTTCAATTTGCAGCCATTTTTATATACCTTTCTTCTTTATTT
TTTTTACTTAATTATGGTGGTGTTCGGGCTAGCTTGTGTTCACTCGACTATTCCATAGGATACATGTCATCTCCCACCAA
CAAAAACGTTTGTACGTCTTCCACTCATTCATATGACTTGTATCTTGTGTTCTGTTTGTAGCTTATTATAGTAACTATTT
TTTGTTCAATGTATCATGTTGTATTATGTACAGTATGTACAAAATCT
ATGGTTGATGCTAATATGGGTGCTGCTCAATTTCCTGATTTTCCTAAAATTGTCACTCATGCTGGACAATATGTTCAGTA
TGACATTTTTGGTAATCTTTTTGAGATTACTAACAAGTATCAACCTCCTATCATGCCTATTGGACGTGGCGCTTATGGAA
TCGTCTGGTAATGTTAATTTTTCGACAAAGTTATGGATTCAGATCTAATATTTATTACATATAGACACTTACAAAATTTG
TGGTCTAAAATGAGATAAATGACAAGTTTGTTGTTCATCGTTACTCCATCCATTTGTACTAGTTGAAGTGTTTTAGTTTG
ATTGAATACGGGGTTTTAAGAGATTTTGATATTGTGATCCTAAATAGAAAGTTGGAACTGGAGGGTTAAAGCAAATGGAT
TGACATATTTAGTTTGTGTATTTGCAGACTGTTGAGTGACTAATTATGGTGTCTTATTTTGTGTGAAGCTCTGTGTTTAA
TGCGGAGCTGAATGAGATGGTTGCAGTTAAGAAAATCGCCAATGCTTTTGATAATTACATGGATGCTAAGAGGACGCTCC
GTGAAATTAAGCTTCTTCGCCATTTAGACCATGAAAACGTGAGTCTTCTTGTGTAACTTTTTCACTTTGGCTATTGCTTA
ACAGGCTACTACTGTTTCACTCTTTTCCATTAGTATCAGAATATGTATGTAGTAGTTGGGATTAACTAGTTATCTGTACA
GGAAAAGTGAGGCCAGTTAGGATTAGTATTGGACTGAAATGAACCAGAGTAGCGTGAATGAATATACAAGATTCATATAG
TTTGATCCCAACTGATCTCCCTCGTTGTAGTGGAATTTCCAAAAGCCGATAATAAACTATTCCTCTGGTTTTCAGCCATG
ATTTTCCGGTTGTACCTACAGTTGGACATAAAATTTTTACAATCACTATTACACTAAGAAAAATTATTATAGTACAAGTA
ATACATTTTGCTTATCAACGAAATCAAAAATGCTATGCAGGTCATTGGTTTAAGAGATGTGATTCCTCCGCCCTTACGAA
GGGAGTTTTCTGATGTTTACATTGCTACTGAACTCATGGATACTGATCTTCACCAAATAATTAGATCAAACCAAGGTTTA
TCAGAGGATCATTGCCAGGTAAACTCACCCCCTTCTCACCCAAATGCTTTCATGGATGCCGTCTTTATTGTTTTTCTAAA
AATTTTCAAAAATGTTACTTTTGCAGTACTTCATGTATCAGCTTCTCCGTGGGCTAAAGTACATACATTCCGCGCATGTT
ATTCATAGAGATCTCAAACCAAGTAACCTCTTGCTAAATGCAAATTGTGATCTTAAGATATGTGATTTTGGTCTTGCAAG
GCCAAACGTAGAGAACGAGAATATGACAGAATATGTAGTAACCAGATGGTACAGAGCACCGGAGCTTTTGTTGAACTCTT
CAGATTACACTGCTGCCATAGATGTTTGGTCTGTGGGTTGCATCTTCATGGAGCTTATGAATAGAAAACCTTTGTTTGCT
GGAAAAGATCATGTACATCAAATTCGCTTGCTAACTGAGGTAAAAACTGATTCATGAAAGATATATTTAACAGAATAGGG
TACACTTTTTTCATGTTTTTACGTGGAACGACGCTTTGCCATGTGGATTCTTGACGTGACATCATCTATTCGAGCTGTCT
CCGTCCAAACAACCATTAACATGAGCCTTTTTTCGACTGCATATAACAACTTAGCATACCTTTCTGAGTGATTTTTGTGA
GAAACAAATGCTCATTTCTTCGTTTATTTTTCTCAGCTTCTTGGCACTCCTACAGAATCTGATCTTAGCTTCCTCCGTAA
TGAAGATGCAAAAAGATACGTCAGGCAACTCCCACAACATCCACGCCAGCAGTTAGCAACAGTGTTCCCTCATGTGAATC
CATTAGCCATTGATCTTGTAGATAAGATGTTGACGCTCGACCCTACTAGAAGAATAACAGGTAGTTTTCCTATCTGCACT
GCTATTTAAGATAGACTGGAAAGCTTGAAAGATCAACAATTTGACTAAAACAACCTCTTTGTAATAAACATAGTATACCT
CTTTTCTTGAATGAATTCACACTTTTAACGCTATGGAGTCCATCTTGCCACCATATCTTCTTACTGAAACTTTCCCTTCT
TGCATTAGTGTAATAAGGGGAGCTAAAGCGACTGCAAATCCCTTTGGGAAGAAAGACTTAACATAATATCAAGTTAATTA
ATTTGTGATTAAAAAAAGAAGGGGTTGATTAAGAACAATAGACAGTCACTCCATCATGTTTATCATCACTATCTTTGGGA
AAGCTTGTCATTCTTTCCTCAGTAAAAAGAGTTCATTTTTGCATAAGCCTGCTCTTTAGCTCATTTTAACTCAAATAACT
TTTGAACAGGTCATTGACCTGCTTATTTATCAATTTACCCCCATTTGACACCCCTGAGCTACACTGAAGGAAGATTTTTG
CTGTAATGTTTTCGATTCATTTCTCTTTTAAGCTCATCGTGTGATATATTTGTGTTTGGTTGCAGTTGAGGAAGCATTAG
CTCATCCCTACCTCGCAAAGCTCCATGATGCAGCTGATGAACCAGTCTGCCCCATCCCGTTCTCTTTCGACTTTGAGCAA
CAAGGGATAGGAGAAGAGCAGATTAAAGACATGATTTATCAAGAAGCTTTGGCGTTGAATCCTGAATATGCTTAAGCATA
AGAGAAATCAGTTCTTCTCTTGCTTACCTAGTGTGGATTTTCTTGCTTGGACCAGCCCTCTCAAAGTTTTTGTTCACAGG
GTCAGTAGTAGTCCTTTGCAACTTTAATGTAAGGCAGCCTTCAATTTGCAGCCATTTTTATATACCTTTCTTCTTTATTT
TTTTTACTTAATTATGGTGGTGTTCGGGCTAGCTTGTGTTCACTCGACTATTCCATAGGATACATGTCATCTCCCACCAA
CAAAAACGTTTGTACGTCTTCCACTCATTCATATGACTTGTATCTTGTGTTCTGTTTGTAGCTTATTATAGTAACTATTT
TTTGTTCAATGTATCATGTTGTATTATGTACAGTATGTACAAAATCT
Download sequence region |
Get flanking sequences on SL2.50ch06
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![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc06g005170.2.1 Mitogen-activated protein kinase 3 (AHRD V1 **** Q84MI4_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase
ATGGTTGATGCTAATATGGGTGCTGCTCAATTTCCTGATTTTCCTAAAATTGTCACTCATGCTGGACAATATGTTCAGTA
TGACATTTTTGGTAATCTTTTTGAGATTACTAACAAGTATCAACCTCCTATCATGCCTATTGGACGTGGCGCTTATGGAA
TCGTCTGCTCTGTGTTTAATGCGGAGCTGAATGAGATGGTTGCAGTTAAGAAAATCGCCAATGCTTTTGATAATTACATG
GATGCTAAGAGGACGCTCCGTGAAATTAAGCTTCTTCGCCATTTAGACCATGAAAACGTCATTGGTTTAAGAGATGTGAT
TCCTCCGCCCTTACGAAGGGAGTTTTCTGATGTTTACATTGCTACTGAACTCATGGATACTGATCTTCACCAAATAATTA
GATCAAACCAAGGTTTATCAGAGGATCATTGCCAGTACTTCATGTATCAGCTTCTCCGTGGGCTAAAGTACATACATTCC
GCGCATGTTATTCATAGAGATCTCAAACCAAGTAACCTCTTGCTAAATGCAAATTGTGATCTTAAGATATGTGATTTTGG
TCTTGCAAGGCCAAACGTAGAGAACGAGAATATGACAGAATATGTAGTAACCAGATGGTACAGAGCACCGGAGCTTTTGT
TGAACTCTTCAGATTACACTGCTGCCATAGATGTTTGGTCTGTGGGTTGCATCTTCATGGAGCTTATGAATAGAAAACCT
TTGTTTGCTGGAAAAGATCATGTACATCAAATTCGCTTGCTAACTGAGCTTCTTGGCACTCCTACAGAATCTGATCTTAG
CTTCCTCCGTAATGAAGATGCAAAAAGATACGTCAGGCAACTCCCACAACATCCACGCCAGCAGTTAGCAACAGTGTTCC
CTCATGTGAATCCATTAGCCATTGATCTTGTAGATAAGATGTTGACGCTCGACCCTACTAGAAGAATAACAGTTGAGGAA
GCATTAGCTCATCCCTACCTCGCAAAGCTCCATGATGCAGCTGATGAACCAGTCTGCCCCATCCCGTTCTCTTTCGACTT
TGAGCAACAAGGGATAGGAGAAGAGCAGATTAAAGACATGATTTATCAAGAAGCTTTGGCGTTGAATCCTGAATATGCTT
AAGCATAAGAGAAATCAGTTCTTCTCTTGCTTACCTAGTGTGGATTTTCTTGCTTGGACCAGCCCTCTCAAAGTTTTTGT
TCACAGGGTCAGTAGTAGTCCTTTGCAACTTTAATGTAAGGCAGCCTTCAATTTGCAGCCATTTTTATATACCTTTCTTC
TTTATTTTTTTTACTTAATTATGGTGGTGTTCGGGCTAGCTTGTGTTCACTCGACTATTCCATAGGATACATGTCATCTC
CCACCAACAAAAACGTTTGTACGTCTTCCACTCATTCATATGACTTGTATCTTGTGTTCTGTTTGTAGCTTATTATAGTA
ACTATTTTTTGTTCAATGTATCATGTTGTATTATGTACAGTATGTACAAAATCT
ATGGTTGATGCTAATATGGGTGCTGCTCAATTTCCTGATTTTCCTAAAATTGTCACTCATGCTGGACAATATGTTCAGTA
TGACATTTTTGGTAATCTTTTTGAGATTACTAACAAGTATCAACCTCCTATCATGCCTATTGGACGTGGCGCTTATGGAA
TCGTCTGCTCTGTGTTTAATGCGGAGCTGAATGAGATGGTTGCAGTTAAGAAAATCGCCAATGCTTTTGATAATTACATG
GATGCTAAGAGGACGCTCCGTGAAATTAAGCTTCTTCGCCATTTAGACCATGAAAACGTCATTGGTTTAAGAGATGTGAT
TCCTCCGCCCTTACGAAGGGAGTTTTCTGATGTTTACATTGCTACTGAACTCATGGATACTGATCTTCACCAAATAATTA
GATCAAACCAAGGTTTATCAGAGGATCATTGCCAGTACTTCATGTATCAGCTTCTCCGTGGGCTAAAGTACATACATTCC
GCGCATGTTATTCATAGAGATCTCAAACCAAGTAACCTCTTGCTAAATGCAAATTGTGATCTTAAGATATGTGATTTTGG
TCTTGCAAGGCCAAACGTAGAGAACGAGAATATGACAGAATATGTAGTAACCAGATGGTACAGAGCACCGGAGCTTTTGT
TGAACTCTTCAGATTACACTGCTGCCATAGATGTTTGGTCTGTGGGTTGCATCTTCATGGAGCTTATGAATAGAAAACCT
TTGTTTGCTGGAAAAGATCATGTACATCAAATTCGCTTGCTAACTGAGCTTCTTGGCACTCCTACAGAATCTGATCTTAG
CTTCCTCCGTAATGAAGATGCAAAAAGATACGTCAGGCAACTCCCACAACATCCACGCCAGCAGTTAGCAACAGTGTTCC
CTCATGTGAATCCATTAGCCATTGATCTTGTAGATAAGATGTTGACGCTCGACCCTACTAGAAGAATAACAGTTGAGGAA
GCATTAGCTCATCCCTACCTCGCAAAGCTCCATGATGCAGCTGATGAACCAGTCTGCCCCATCCCGTTCTCTTTCGACTT
TGAGCAACAAGGGATAGGAGAAGAGCAGATTAAAGACATGATTTATCAAGAAGCTTTGGCGTTGAATCCTGAATATGCTT
AAGCATAAGAGAAATCAGTTCTTCTCTTGCTTACCTAGTGTGGATTTTCTTGCTTGGACCAGCCCTCTCAAAGTTTTTGT
TCACAGGGTCAGTAGTAGTCCTTTGCAACTTTAATGTAAGGCAGCCTTCAATTTGCAGCCATTTTTATATACCTTTCTTC
TTTATTTTTTTTACTTAATTATGGTGGTGTTCGGGCTAGCTTGTGTTCACTCGACTATTCCATAGGATACATGTCATCTC
CCACCAACAAAAACGTTTGTACGTCTTCCACTCATTCATATGACTTGTATCTTGTGTTCTGTTTGTAGCTTATTATAGTA
ACTATTTTTTGTTCAATGTATCATGTTGTATTATGTACAGTATGTACAAAATCT
![]() ![]() | translated polypeptide sequence |
>Solyc06g005170.2.1 Mitogen-activated protein kinase 3 (AHRD V1 **** Q84MI4_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase
MVDANMGAAQFPDFPKIVTHAGQYVQYDIFGNLFEITNKYQPPIMPIGRGAYGIVCSVFNAELNEMVAVKKIANAFDNYM
DAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFSDVYIATELMDTDLHQIIRSNQGLSEDHCQYFMYQLLRGLKYIHS
AHVIHRDLKPSNLLLNANCDLKICDFGLARPNVENENMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRKP
LFAGKDHVHQIRLLTELLGTPTESDLSFLRNEDAKRYVRQLPQHPRQQLATVFPHVNPLAIDLVDKMLTLDPTRRITVEE
ALAHPYLAKLHDAADEPVCPIPFSFDFEQQGIGEEQIKDMIYQEALALNPEYA*
MVDANMGAAQFPDFPKIVTHAGQYVQYDIFGNLFEITNKYQPPIMPIGRGAYGIVCSVFNAELNEMVAVKKIANAFDNYM
DAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFSDVYIATELMDTDLHQIIRSNQGLSEDHCQYFMYQLLRGLKYIHS
AHVIHRDLKPSNLLLNANCDLKICDFGLARPNVENENMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRKP
LFAGKDHVHQIRLLTELLGTPTESDLSFLRNEDAKRYVRQLPQHPRQQLATVFPHVNPLAIDLVDKMLTLDPTRRITVEE
ALAHPYLAKLHDAADEPVCPIPFSFDFEQQGIGEEQIKDMIYQEALALNPEYA*
![]() ![]() |
![]() ![]() | [Associate new unigene] |
Unigene ID:
SGN-U567335 Tomato 200607 -- build 2 -- 38 members [Remove] [Blast]
SGN-U587406 Tomato 200607 -- build 2 -- 1 members [Remove] [Blast]
SGN-U587406 Tomato 200607 -- build 2 -- 1 members [Remove] [Blast]
![]() ![]() | [Associate new genbank sequence] |
AY261514 Lycopersicon esculentum mitogen-activated protein kinase 3 (MPK3) mRNA, complete cds.
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
Convergence of signaling pathways induced by systemin, oligosaccharide elicitors, and ultraviolet-B radiation at the level of mitogen-activated protein kinases in Lycopersicon peruvianum suspension-cultured cells.
Plant physiology (2003)
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We tested whether signaling pathways induced by systemin, oligosaccharide elicitors (OEs), and ultraviolet (UV)-B radiation share common components in Lycopersicon peruvianum suspension-cultured cells. These stress signals all induce mitogen-activated protein kinase (MAPK) activity. In desensitization assays, we found that pretreatment with systemin and OEs transiently reduced the MAPK response to a subsequent treatment with the same or a different elicitor. In contrast, MAPK activity in response to UV-B increased after pretreatment with systemin and OEs. These experiments demonstrate the presence of signaling components that are shared by systemin, OEs, and UV-B. Based on desensitization assays, it is not clear if the same or different MAPKs are activated by different stress signals. To identify specific stress-responsive MAPKs, we cloned three MAPKs from a tomato (Lycopersicon esculentum) leaf cDNA library, generated member-specific antibodies, and performed immunocomplex kinase assays with extracts from elicited L. peruvianum cells. Two highly homologous MAPKs, LeMPK1 and LeMPK2, were activated in response to systemin, four different OEs, and UV-B radiation. An additional MAPK, LeMPK3, was only activated by UV-B radiation. The common activation of LeMPK1 and LeMPK2 by many stress signals is consistent with the desensitization assays and may account for substantial overlaps among stress responses. On the other hand, MAPK activation kinetics in response to elicitors and UV-B differed substantially, and UV-B activated a different set of LeMPKs than the elicitors. These differences may account for UV-B-specific responses.
Holley, SR. Yalamanchili, RD. Moura, DS. Ryan, CA. Stratmann, JW.
Plant physiology.
2003.
132(4).
1728-38.
Genome-wide analysis of the mitogen-activated protein kinase gene family in Solanum lycopersicum.
Gene (2012)
Show / hide abstract
Show / hide abstract
Mitogen-activated protein kinases (MAPKs), a family of Ser/Thr protein kinases, play an essential role in mediating biotic and abiotic stress responses in plants. In this study, we investigated 16 putative SlMAPK genes from tomato genome and compared them with those from Arabidopsis. The full cDNA sequences of 13 novel SlMAPKs in tomato were obtained through PCR ampilification. A comprehensive genome-wide analysis of SlMAPKs in tomato is presented, including their gene structure, phylogeny, genome localization, and expression profiles. Phylogenic analysis of the 16 SlMAPKs and 20 AtMAPKs from Arabidopsis indicated that the SlMAPK genes were clustered into four major groups, and genes within the same groups had similar exon-intron structures. All SlMAPK proteins in groups A, B and C had a Thr-Glu-Tyr (TEY) activation domain, whereas those in group D contained a Thr-Asp-Tyr (TDY) activation domain. The analysis of 5'-upstream region of SlMAPKs revealed a group of putative cis-acting elements related to stress responses. Expression analysis of SlMAPK genes using RT-PCR and real-time quantitative PCR demonstrated that all SlMAPK transcripts were able to be detected in at least one investigated tissue, and some of them exhibited tissue-specific expression patterns. The transcript abundance of nearly all SlMAPK genes was increased in response to heat stress treatment. Our data provided an insight into the evolution of the gene family and a useful reference for further functional analysis of MAPK family genes in tomato.
Kong, F. Wang, J. Cheng, L. Liu, S. Wu, J. Peng, Z. Lu, G.
Gene.
2012.
().
.
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